Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3219 ATGGATATCAACAGAATCCAAAGCAGCTCTTCATCACCTTTGTTTAAATGGAAATATGATGTGTTTGTGAGCTTTAGAGGTGAAGACACAAGGAACAACTTCACTGATCATCTTTTCGGTGCTCTCCAAAGAAAAGGCTTTGTTACTTTCAGGGATGACACTAAGCTCAGAAAAGGAGAACAGATATCCACTGAGCTTCTACAAGCAATTGAAGTATCCAAGATTTTGATTGTGGTATTCTCAGAAAACTATGCTTCTTCCACATGGTGCTTGGAAGAACTGGCAAAGATTGCTGACTGCATTGAAGTGCCAGGACAAACTGTTCTGCCTATTTTCTATGATGTGAGTCCATCTGAGGTGCGAAAACAAACCTGGGATTATGGAAAAGCCTTTGCAGATCATCAAGAAAGGTTCAAAGAAAATTTAGGGATGGTTCAAAAATGGAGGGAAGCTCTAACACAAGTAGCCAATCTCTCTGGCTGGGATGTGAGGGATAAGCCACAATATGCAGAGATTGGAAAAATCGTTCAAAAGGTAGCGTGCATATTAGCTCAAAAACATTTAAAATTACCGCATGATATAGTTGGGTTGGACTCACGGGTAGAAGAACTTGAAAAGCTTCTGGCTTTGGACTCAGATGATATTGGAGTTGTAGGGATTTGTGGAATGGGTGGAATAGGGAAGACAACTCTTGCTACTGCTGTGTATGACAGAATCTCTAATCAATATGATGCATCATGTTTTATTGATGATATGAGCAAACTTTATGCAAACTACGGTCCCATTGGCGCACAAAAGCAACTTCTCTGTCAAACTCTCAGTGAAGAAGAAAATCTTCATATATGGAATCTTCCTAAGGCAAATAATTTGATTCGAACAAGGCTTTGTCAAACAAAGGCCCTCATAGTTCTTGATAATGTTGATCAAGTTGATCAATTGGATAAATTGGGTATGGAACGAGATTTGCTGGGTAAAGGGAGTAAAGTCATCATAATTTCTAGAGATGAACATATCTTGAGATCATATCAAGTGGATGAAGTTTACATGGTTCAACCTTTGAATGATTACAATGCTCGTCAATTGTTTTGCAAAAAAGCTTTTAAATGTAATGATGTAGTGAGAGATTACATGGAATTGGTATGTGATGTTCTAAGTTATGCTAACGGCCATCCTTTAGCAATTAAAGTATTGGGTTCATTTTTGTTTGGTCGTGATGTTCCTGCATGGAGAAGTGCATTGGTCAGATTGAAAGAAAATCCAAGGAAAGATATAATGGATGGGCTTCGAATTAGTTACGATGCATTGGAGAGCACCGAAAAGGAAATATTCTTGGATATTGCTTGTTTCTTTGATGGCAAAAATGAGGCATATGTGAAGGAATTTCTAGATTTTCGTGGATTTTTCCCTCAAGTTGGTTTAAGAGTTCTCATTGATAAATCACTCATAACTGTTGAGAAGAGGCTTATTAGGATGCATAAATTGTTGAGAGAGCTGGGAAGGAGCATTGTTCGAGAAAAATCACCCAAAGAACCAATAAATTGGAGCAGGTTGTGGGACTACAAGGATCTGCAAAATATTTTATTAGAAAACAAGGTACATAGGCTCATGTTGATCAAAAAAAAAAATAAAAAAATGAGGGCTCATGGTTTATCAAAAATGAGTCACCTTAAGGTGCTTGAGCTTTGGAATATAAATTTTTCAGGAAGCCTCAATAATCTTTCTAATGAATTAGGATATCTTTCTTGGTATGAATATCCTTTCACATGTTTGCCATCAGAATTTCAAACTGACAAACTGGTTAAATTGGAGCTACGCCGTAGCAATATCAAACAACTATGGGAAGACTCAAAGCCTCTGCCCAGTTTGAGACGTATTGATCTCTCTAACTCGAAAAGTCTTATTAAGACGCCAGATTTTAGAGAGATCCCAAATCTGGAGCGGCTAGATCTTGAAGGATGCGTAAAACTTGTGCAGATCCATCCATCCATTGGAATTTTGAAAAAGCTTATTTTTTTGAACTTGCAAAATTGTAAAAATCTGGTCAGTATTCCCAATAGCATTTTTGGAATTTGTTCTCTTAAAGATCTAAATCTCTGTGGCTGCTCAAAATTACTTAAGCTCTTAGATAAAACAAAGGATGGAGATCATTTGAAGAGGCTTGAAATAAAGGAAAGAACTATCCAACGACTGTCAACATCATCCATCTACAAAATTCTTAAGTTTCCTTTCCATTCTCGGAGGCATGGAGATGCATTTGGTTTATTGCAATTGCCTGATTATGCTTGTCTCCCATGTTTGCAATATCTTGACCTAAGCTTCTGCAATCTACTTGAGATCCCTGATGCTATTGGGTTGTTACATTCTTTAGAAAGATTAAATTTAGGAGGAAACAGTTTTGTGAAACTACCTTCTAGCATCAAGGAACTTTCCAAACTTGTAGTTTTGAACCTGGACTACTGTAAGCAACTAAAATACTTGCCTGAGCTCCCATCAAGAACTCTCTTGCGAATAAGAAGCGGAACATTTTATTCATGGTTTTATATTTTTGAGTGTCCTAAATTGTGTGAGATGGATCGCTGTTATAGCATGGCTTTTTCTTGGATGATACGAATCCTAAAGGCACTTCACATGCAATCCTCTTCCGCCCTTGGTCATGTTGAAATTATTATTCCTGGAGCTCAAATTCCAATGTGGTTCTCCAATCAAAATATAGGTCGTTCAATAAGGCTGGATCCTTCTCCCATTTTGCTTAACAAAAATTGGATAGGTGTTGCTTGCTGTGTAGCATTTGTGGGGCATCATGATCCAACTAATTTGAGTGATGACATAGGTTCTCCCATTCTTTGCGGTTTCCAAACGAAATTGAATGGGTTCTTTTCCCCCATGCAAGCACAGGTTGGGAAAGATCTGATCACAGATGGATTAGATCACATGTGGCTACTCTTTTTCAGTCGAGAGGAATTTTTTAGGATATATGCAACAAAAGGAATACATGATCTTCTTGATGGTATGAAATTTGAAACCGATGTTGGGCATCCCAAAGGTTTGCATTACGAGGTGAAAGAGTGTGGGTATCGTTGGGTATTTGAGGAGGATCTGGAACAATTAAACCCAGAAATGATGTATAGTGGAAATTCATTAGATCGGAAGCAAAAGTTCATAGCAAATCATTAG 3174 0.3774 MDINRIQSSSSSPLFKWKYDVFVSFRGEDTRNNFTDHLFGALQRKGFVTFRDDTKLRKGEQISTELLQAIEVSKILIVVFSENYASSTWCLEELAKIADCIEVPGQTVLPIFYDVSPSEVRKQTWDYGKAFADHQERFKENLGMVQKWREALTQVANLSGWDVRDKPQYAEIGKIVQKVACILAQKHLKLPHDIVGLDSRVEELEKLLALDSDDIGVVGICGMGGIGKTTLATAVYDRISNQYDASCFIDDMSKLYANYGPIGAQKQLLCQTLSEEENLHIWNLPKANNLIRTRLCQTKALIVLDNVDQVDQLDKLGMERDLLGKGSKVIIISRDEHILRSYQVDEVYMVQPLNDYNARQLFCKKAFKCNDVVRDYMELVCDVLSYANGHPLAIKVLGSFLFGRDVPAWRSALVRLKENPRKDIMDGLRISYDALESTEKEIFLDIACFFDGKNEAYVKEFLDFRGFFPQVGLRVLIDKSLITVEKRLIRMHKLLRELGRSIVREKSPKEPINWSRLWDYKDLQNILLENKVHRLMLIKKKNKKMRAHGLSKMSHLKVLELWNINFSGSLNNLSNELGYLSWYEYPFTCLPSEFQTDKLVKLELRRSNIKQLWEDSKPLPSLRRIDLSNSKSLIKTPDFREIPNLERLDLEGCVKLVQIHPSIGILKKLIFLNLQNCKNLVSIPNSIFGICSLKDLNLCGCSKLLKLLDKTKDGDHLKRLEIKERTIQRLSTSSIYKILKFPFHSRRHGDAFGLLQLPDYACLPCLQYLDLSFCNLLEIPDAIGLLHSLERLNLGGNSFVKLPSSIKELSKLVVLNLDYCKQLKYLPELPSRTLLRIRSGTFYSWFYIFECPKLCEMDRCYSMAFSWMIRILKALHMQSSSALGHVEIIIPGAQIPMWFSNQNIGRSIRLDPSPILLNKNWIGVACCVAFVGHHDPTNLSDDIGSPILCGFQTKLNGFFSPMQAQVGKDLITDGLDHMWLLFFSREEFFRIYATKGIHDLLDGMKFETDVGHPKGLHYEVKECGYRWVFEEDLEQLNPEMMYSGNSLDRKQKFIANH* 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3219 1057 ProSiteProfiles TIR domain profile. 17 183 IPR000157 GO:0007165
Lja5g3219 1057 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 192 1037 - -
Lja5g3219 1057 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 446 IPR027417 -
Lja5g3219 1057 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 161 IPR035897 -
Lja5g3219 1057 Gene3D - 353 436 IPR042197 -
Lja5g3219 1057 Gene3D - 12 182 IPR035897 -
Lja5g3219 1057 SUPERFAMILY L domain-like 536 856 - -
Lja5g3219 1057 Pfam C-JID domain 890 1034 IPR045344 -
Lja5g3219 1057 Gene3D Ribonuclease Inhibitor 531 737 IPR032675 -
Lja5g3219 1057 Gene3D - 183 350 IPR027417 -
Lja5g3219 1057 Gene3D Ribonuclease Inhibitor 751 902 IPR032675 -
Lja5g3219 1057 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 192 1037 IPR044974 GO:0006952
Lja5g3219 1057 Pfam Leucine rich repeat 766 820 IPR001611 GO:0005515
Lja5g3219 1057 PRINTS Disease resistance protein signature 294 308 - -
Lja5g3219 1057 PRINTS Disease resistance protein signature 617 633 - -
Lja5g3219 1057 PRINTS Disease resistance protein signature 217 232 - -
Lja5g3219 1057 PRINTS Disease resistance protein signature 387 401 - -
Lja5g3219 1057 Pfam NB-ARC domain 201 424 IPR002182 GO:0043531
Lja5g3219 1057 ProSiteProfiles Leucine-rich repeat profile. 765 786 IPR001611 GO:0005515
Lja5g3219 1057 SMART till_3 18 158 IPR000157 GO:0007165
Lja5g3219 1057 SUPERFAMILY "Winged helix" DNA-binding domain 423 526 IPR036390 -
Lja5g3219 1057 Pfam TIR domain 18 166 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3219 Lja-Chr5 62321919 62328263 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3219 19 816 WRKY Transcription Factor Family AT4G12020 28.423 4.35e-79 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3219 - - mtr:MTR_4g080777 1286.94