Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3212 ATGGCACTTACCCTAAACTCCAAAGCCTTTTTCATCTTCCACCTGCTCCTCCTATTAGGTAATGTAGCATCTGCTACACTGTTCACCCTTGAGAATCACTGCACTTACACAGTTTGGCCGGGAACTCTTTCAGGCAACGGCGCAGCGGTTCTTGGTGATGGCGGTTTTTCCCTGGCACCCGGCGCTTCCGTTCAGGTGACGGCGCCGTCAGGCTGGTCCGGGCGCTTCTGGGCCCGGACCGGCTGCAATTTTGACGGCACCGGGAACGGAAACTGCGCCACCGGAGACTGTGCCGGAGGACTGAAGTGCACAGGAGGAGGTGTCCCTCCGGTGACGCTAGCCGAGTTCACTATCGGAACCGCCAGTAACGGTAACAAGGACTTCTATGACGTGAGCTTGGTCGACGGTTACAACGTGGGAATGGGGGTACGGGCTACCGGAGGAACCGGTGACTGCCAGTACGCCGGTTGTGTTGCGGATTTGAACGGCTCCTGCCCGGCGGAGCTGCAGGTTAAAGGGGAAAACAGCACCGGCGAGGTGGTTGCGTGCAAGAGCGCGTGCGCGGCGTTTAATACGACGGAGTTTTGCTGCACCGGCGAGCACGCGACGCCGGCGACATGTTCGCCGACGCATTACTCGGAGATTTTCAAGAGTGCGTGTCCAACGGCTTACAGTTACGCTTACGATGATGCGACAAGCACGTGCACGTGTTCTGGTTCTGATTACAGCATCACGTTTTGCCCCAATGGATCTTCCTAG 759 0.5771 MALTLNSKAFFIFHLLLLLGNVASATLFTLENHCTYTVWPGTLSGNGAAVLGDGGFSLAPGASVQVTAPSGWSGRFWARTGCNFDGTGNGNCATGDCAGGLKCTGGGVPPVTLAEFTIGTASNGNKDFYDVSLVDGYNVGMGVRATGGTGDCQYAGCVADLNGSCPAELQVKGENSTGEVVACKSACAAFNTTEFCCTGEHATPATCSPTHYSEIFKSACPTAYSYAYDDATSTCTCSGSDYSITFCPNGSS* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3212 252 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Lja5g3212 252 PRINTS Pathogenesis-related protein signature 88 117 IPR001938 -
Lja5g3212 252 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
Lja5g3212 252 PRINTS Pathogenesis-related protein signature 27 39 IPR001938 -
Lja5g3212 252 Gene3D Thaumatin 26 248 IPR037176 -
Lja5g3212 252 Pfam Thaumatin family 32 248 IPR001938 -
Lja5g3212 252 PIRSF PR5 2 252 IPR001938 -
Lja5g3212 252 ProSitePatterns Thaumatin family signature. 88 103 IPR017949 -
Lja5g3212 252 SUPERFAMILY Osmotin, thaumatin-like protein 27 249 IPR037176 -
Lja5g3212 252 PANTHER OS03G0233200 PROTEIN 7 249 IPR001938 -
Lja5g3212 252 ProSiteProfiles Thaumatin family profile. 25 250 IPR001938 -
Lja5g3212 252 PANTHER PATHOGENESIS-RELATED PROTEIN 5-RELATED 7 249 - -
Lja5g3212 252 CDD TLP-PA 28 247 - -
Lja5g3212 252 SMART tha2 28 248 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3212 Lja-Chr5 62200419 62201696 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3212 28 252 Receptor kinase-like Gene Family AT5G38280 49.565 1.46e-67 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3212 - - gmx:100809378 444.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3212 5 62200419 62201696 Lja5g3212 5 62200419 62201696 ECH