Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lja5g3209 | ATGCGTGTTTGGTTTGCTCAATCGTTATTTGATGCTGAATCATCTGAGTCTATAAACCCTGATTCGATCCAGATGGCGAGCGGGTTTGGGGAATCAACAAGCAGGTCACCCCCAAGCCCTTCCTACGCCGGCAACAATAATAGTGATGCTGGCAATTTTGAATGCAACATTTGCTTTGACTTAGCCCAAGACCCTATTATTACCTTATGCGGTCATCTTTTCTGCTGGCCTTGCCTTTACAAGTGGCTTCATTTTCACTCACAGTCACGAGAATGCCCGGTGTGCAAGGCACTGGTTGAAGAGGAGAAGTTGGTTCCCTTGTATGGGAGAGGAAAGACATCATCTGACCCGAGATCAAGATCTATTCCCGGTGTTAATATCCCGCACCGTCCTGCAGGTCAGAGACCTGAGACTGCTCCTCCGCCTGAACCGAATCCCTTTGCTCATCATGGGTTTGGATTCACGGGTGGTTTGGGAGGGTTTGCACCTGCGGCAACAGCAAGATTTGGGAATTTCACACTGTCAGCAGCATTTGGTGGTTTTATACCATCCTTGTTTAACTTTCAATTGCATGGGTTTCATGGTGCGACCATGTATGGTGGAGCGCCTGGTTTCCCATATGGGTTTTCTAATTCATTTCATGGTGGCCATGTTCATAGATATCCTTTGCACACAGGTCAAGGGCAACAAGATTATTATCTCAAGAGGCTGCTGTTCTTTGTTATTTTCTGTGTGGTCCTTGCTTTTATTTGGCAATAG | 759 | 0.4664 | MRVWFAQSLFDAESSESINPDSIQMASGFGESTSRSPPSPSYAGNNNSDAGNFECNICFDLAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKALVEEEKLVPLYGRGKTSSDPRSRSIPGVNIPHRPAGQRPETAPPPEPNPFAHHGFGFTGGLGGFAPAATARFGNFTLSAAFGGFIPSLFNFQLHGFHGATMYGGAPGFPYGFSNSFHGGHVHRYPLHTGQGQQDYYLKRLLFFVIFCVVLAFIWQ* | 253 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lja5g3209 | 252 | MobiDBLite | consensus disorder prediction | 109 | 145 | - | - | |
Lja5g3209 | 252 | SUPERFAMILY | RING/U-box | 49 | 101 | - | - | |
Lja5g3209 | 252 | PANTHER | OS12G0636000 PROTEIN | 26 | 252 | - | - | |
Lja5g3209 | 252 | Pfam | Zinc finger, C3HC4 type (RING finger) | 55 | 95 | IPR018957 | GO:0046872 | |
Lja5g3209 | 252 | ProSiteProfiles | Zinc finger RING-type profile. | 55 | 96 | IPR001841 | - | |
Lja5g3209 | 252 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 26 | 252 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Lja5g3209 | 252 | SMART | ring_2 | 55 | 95 | IPR001841 | - | |
Lja5g3209 | 252 | CDD | RING-HC_AtRMA_like | 53 | 97 | - | - | |
Lja5g3209 | 252 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 41 | 109 | IPR013083 | - | |
Lja5g3209 | 252 | MobiDBLite | consensus disorder prediction | 20 | 45 | - | - | |
Lja5g3209 | 252 | ProSitePatterns | Zinc finger RING-type signature. | 70 | 79 | IPR017907 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lja5g3209 | Lja-Chr5 | 62161675 | 62164253 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lja5g3209 | 53 | 235 | C3H Transcription Factor Family | AT1G19310 | 69.841 | 2.70e-89 | 262 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lja5g3209 | K10666 | - | gmx:100527488 | 390.193 |