Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3209 ATGCGTGTTTGGTTTGCTCAATCGTTATTTGATGCTGAATCATCTGAGTCTATAAACCCTGATTCGATCCAGATGGCGAGCGGGTTTGGGGAATCAACAAGCAGGTCACCCCCAAGCCCTTCCTACGCCGGCAACAATAATAGTGATGCTGGCAATTTTGAATGCAACATTTGCTTTGACTTAGCCCAAGACCCTATTATTACCTTATGCGGTCATCTTTTCTGCTGGCCTTGCCTTTACAAGTGGCTTCATTTTCACTCACAGTCACGAGAATGCCCGGTGTGCAAGGCACTGGTTGAAGAGGAGAAGTTGGTTCCCTTGTATGGGAGAGGAAAGACATCATCTGACCCGAGATCAAGATCTATTCCCGGTGTTAATATCCCGCACCGTCCTGCAGGTCAGAGACCTGAGACTGCTCCTCCGCCTGAACCGAATCCCTTTGCTCATCATGGGTTTGGATTCACGGGTGGTTTGGGAGGGTTTGCACCTGCGGCAACAGCAAGATTTGGGAATTTCACACTGTCAGCAGCATTTGGTGGTTTTATACCATCCTTGTTTAACTTTCAATTGCATGGGTTTCATGGTGCGACCATGTATGGTGGAGCGCCTGGTTTCCCATATGGGTTTTCTAATTCATTTCATGGTGGCCATGTTCATAGATATCCTTTGCACACAGGTCAAGGGCAACAAGATTATTATCTCAAGAGGCTGCTGTTCTTTGTTATTTTCTGTGTGGTCCTTGCTTTTATTTGGCAATAG 759 0.4664 MRVWFAQSLFDAESSESINPDSIQMASGFGESTSRSPPSPSYAGNNNSDAGNFECNICFDLAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKALVEEEKLVPLYGRGKTSSDPRSRSIPGVNIPHRPAGQRPETAPPPEPNPFAHHGFGFTGGLGGFAPAATARFGNFTLSAAFGGFIPSLFNFQLHGFHGATMYGGAPGFPYGFSNSFHGGHVHRYPLHTGQGQQDYYLKRLLFFVIFCVVLAFIWQ* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3209 252 MobiDBLite consensus disorder prediction 109 145 - -
Lja5g3209 252 SUPERFAMILY RING/U-box 49 101 - -
Lja5g3209 252 PANTHER OS12G0636000 PROTEIN 26 252 - -
Lja5g3209 252 Pfam Zinc finger, C3HC4 type (RING finger) 55 95 IPR018957 GO:0046872
Lja5g3209 252 ProSiteProfiles Zinc finger RING-type profile. 55 96 IPR001841 -
Lja5g3209 252 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 26 252 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lja5g3209 252 SMART ring_2 55 95 IPR001841 -
Lja5g3209 252 CDD RING-HC_AtRMA_like 53 97 - -
Lja5g3209 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 109 IPR013083 -
Lja5g3209 252 MobiDBLite consensus disorder prediction 20 45 - -
Lja5g3209 252 ProSitePatterns Zinc finger RING-type signature. 70 79 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3209 Lja-Chr5 62161675 62164253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3209 53 235 C3H Transcription Factor Family AT1G19310 69.841 2.70e-89 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3209 K10666 - gmx:100527488 390.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3209 5 62161675 62164253 Lja2g0410 2 3756132 3757671 ECH
Lja5g3209 5 62161675 62164253 Lja5g3209 5 62161675 62164253 ECH