Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3205 ATGCGGAGAGAACAATCCCAGTCTCCTTGCCTAACAGATGCGGAGCCAGATATAATAAGTTTCTTACCAGGTCATGTAATAGACCACATTCTCTCACTTTTGCCAATTAGGGAGGCGGTGAGGACGAGTGTATTGGCTAGCAAATGGAGGTACAAGTGGGCCACTTTACCAAATCTGGTGTTCGATAACCAATGTGTCTCTGTGACTTCCGAAGACCATTTAGTTATCAAGAAGAAGCTCTTGAGAGTTATTGATCATGTACTTTTACTTCATTCGGGCTCAATCAACAAGTTCAAGCTCTCCCATCGTGATCTCATTGCTGTGACTGATATTGATCGGTGGATTCTTCATGTGTGCAGAAGGTCTGTTAAGGAGCTAGTTCTGGAAGTCTGGAAAGGGCAACGCTATCTGATACACTCTTGCATATTTTCTTGCCAAAGTCTAAATCATTTAGAATTATTTAATTGTTGGCTTAAACCGCCATCAACGTTTAAAGGATTCAGAAACTTGAAGAGTCTTGATCTGCAACATGTTACCTTGACTCAAGATGTTTTTGAAAATTTGATATCCAGATGCCCTCTGCTTGAACGGTTGACATTGATGAACTTTGATGGTTTTAGTCATCTTAATATCAGTGCGCCAAAACTCCAGTTTTTTGACATCGGAGGTAAATTTGATGATATTAGCTTTGAGAACACTTTCCAGTTAGCTGTGGTATCCATTGGTTTGTATGTGAGCTTTGAAAACAATGAAAGATTGCTTGGAGGTGCTAGCAATTTGCTCAAGTTTTTTGTTCATCTACCTTGTGTGAAAAGGCTAGAGGTTCAGAGCTACTTTCTGAAGTATTTGACAATAGGGTTTGTGCCGGAGAAGCTTCCTAGACCTTGCATTGATCTGACTTATCTCTCCATACGCATGAACTTCTATGATGTGAAGGAAATTTCAGGTGCTCTTTGCCTATTAAGAAGCTCACCTAATCTACAAGAACTAGAAATATTGACTCGATCTGAGGAGCCGAATGTTCTGTTAGCACAACCCTATTGCTGGGAAGATTTCTATTTGAATTTCCCAGTCATGCAACTGCGACATGTGAGGATAGATGGCGTGTCTGATTTCAAGGCTGAATTAGATTTTATCAGCTTCCTCTTACTGTATTCTCCTGTGTTAGAAAGGATGACTGTGAAGCCTATAAACCTCGAGCTAGGGTTGATGAAAGAGCTGATGAAAGAACTAATGCGGTTCAAGAGAGCCTCAGCTCGAGCTGAACTTATTTTCCTAGAATCTTGA 1287 0.4064 MRREQSQSPCLTDAEPDIISFLPGHVIDHILSLLPIREAVRTSVLASKWRYKWATLPNLVFDNQCVSVTSEDHLVIKKKLLRVIDHVLLLHSGSINKFKLSHRDLIAVTDIDRWILHVCRRSVKELVLEVWKGQRYLIHSCIFSCQSLNHLELFNCWLKPPSTFKGFRNLKSLDLQHVTLTQDVFENLISRCPLLERLTLMNFDGFSHLNISAPKLQFFDIGGKFDDISFENTFQLAVVSIGLYVSFENNERLLGGASNLLKFFVHLPCVKRLEVQSYFLKYLTIGFVPEKLPRPCIDLTYLSIRMNFYDVKEISGALCLLRSSPNLQELEILTRSEEPNVLLAQPYCWEDFYLNFPVMQLRHVRIDGVSDFKAELDFISFLLLYSPVLERMTVKPINLELGLMKELMKELMRFKRASARAELIFLES* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3205 428 PANTHER F-BOX PROTEIN-LIKE 13 392 - -
Lja5g3205 428 Pfam Leucine Rich Repeat 169 193 IPR013101 -
Lja5g3205 428 SUPERFAMILY F-box domain 16 62 IPR036047 GO:0005515
Lja5g3205 428 Gene3D Ribonuclease Inhibitor 94 373 IPR032675 -
Lja5g3205 428 PANTHER F-BOX/RNI/FBD-LIKE DOMAIN PROTEIN 13 392 - -
Lja5g3205 428 SUPERFAMILY RNI-like 117 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3205 Lja-Chr5 62111122 62113990 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3205 5 249 EF-hand Containing Proteins AT5G41840 24.176 2.18e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3205 - - gmx:100782183 679.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3205 5 62111122 62113990 Lja5g3205 5 62111122 62113990 ECH