Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3186 ATGGCAGATCAAAACTGTGGTGGCTGTAGATCCTGGGTGGACGACATTTACTGGTCCCATTTCCAATTCCTTCACTTTGCTCAATTCCTCCGTGCTGATTATGAACAGAACCTTGCACTTCCCAAAACATTTTCTGATAATTTAAAGAAGAAGCTGCCGGAAAATGTGACCCTTAAAGGTCCTGGTGGGGTTGTGTGGAATATAGGACTGACAACCAAGGAAGATACTTTGTACTTCAAGCACGGGTGGGAACAATTTGTGAAAGACCACTCTTTGAAAGAGAATGATTTCCTAGTCTTTAAGTACAATGGTGAATCAGTGTTTGATGTTCTGGTATTTGATGGGGAGAGCTTCTGTGAGAAGGCAGGTTCTTATTTTGTTCGAAAATGCGGGCATGCTACTGCTGAAAATGCTGGTGGTGGATGTTCTAGCAAGAGAAGAGATACTGATAACTCTGGTGAAGAAGTTAACACTCCTTCCAATGGGGGTGTTGAGTGTGTTTCTCCTGAGAAATCTGAGCACATTAACAGTATAGGAGTGCCATTTGCAGTTCCTATTGAAAATCCTAATGAAAAGCCTTCAAATGCTGGTGTTGAATTTGCTTGCCCTGAGCAATTTATGGAGGACGTAGTCCCGGATCGAAATGCTGTTCCCTCCCAAGCTGTTCCTTCCCAAACTGTTCCCTCCCAAACTGTTACCTCCCAAACTGTTCCTTCCCAAACTGTTACCTCCCAAACTGTTCCTTCCCAAACTGTTCCCTCTGAAACTGATCCCCCGCAAACTATTGGTAAAAGGATCAGGAAGCCTGTTTATGCTGCTACGCCCACCCCGGCTAAGAAGAGAGGAAGACCACCAAAAACATCTAGCTCTCACGAGAGATCCATTGAATGGGTGACGGTGGAACTTGAACCTGAACCTGCTTCAGTGAGTAGAACTGGGACAAGTGAGTTATATACCTCAAACAGAAGGCCTGTCACAGAAAATGAGATTGAAAATGCCCTCCACTTGGCCAGGGCAGCATGTACCGACTTCAGTTGGCATGTAGTTATGCGACCTACTCATGTATACAAGAGATTCTTCGTGTCAATCCCTAACAAGTGGATATTGAACCATATTTCTCCGTCATCGCAAGATGTAATACTGCGCTCAGGGAACGGTGAATGGGTTGCCAGATACAGCTACCATGCTATTCGCCACTCTGGAGGACTTACTAATGGGTGGAAGCATTTTGCCGTGGACAATAACCTCGAAGAATTTGATGTTTGCGTGCTTACACCAGCTGGCAAGGTCAACAACACATTGATTGTAGACGTGAGCATTTTTCGAGTGGTTGAGGAGTTTATCCCTCTCACTGCAGTGAATTCTCCGGGGAAGAGGAGGGGTAGGAAGTCAGTAGCCAGTATTGCTTAG 1410 0.4532 MADQNCGGCRSWVDDIYWSHFQFLHFAQFLRADYEQNLALPKTFSDNLKKKLPENVTLKGPGGVVWNIGLTTKEDTLYFKHGWEQFVKDHSLKENDFLVFKYNGESVFDVLVFDGESFCEKAGSYFVRKCGHATAENAGGGCSSKRRDTDNSGEEVNTPSNGGVECVSPEKSEHINSIGVPFAVPIENPNEKPSNAGVEFACPEQFMEDVVPDRNAVPSQAVPSQTVPSQTVTSQTVPSQTVTSQTVPSQTVPSETDPPQTIGKRIRKPVYAATPTPAKKRGRPPKTSSSHERSIEWVTVELEPEPASVSRTGTSELYTSNRRPVTENEIENALHLARAACTDFSWHVVMRPTHVYKRFFVSIPNKWILNHISPSSQDVILRSGNGEWVARYSYHAIRHSGGLTNGWKHFAVDNNLEEFDVCVLTPAGKVNNTLIVDVSIFRVVEEFIPLTAVNSPGKRRGRKSVASIA* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3186 469 CDD B3_DNA 349 442 IPR003340 GO:0003677
Lja5g3186 469 ProSiteProfiles B3 DNA-binding domain profile. 23 116 IPR003340 GO:0003677
Lja5g3186 469 MobiDBLite consensus disorder prediction 217 294 - -
Lja5g3186 469 MobiDBLite consensus disorder prediction 136 170 - -
Lja5g3186 469 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 313 452 IPR044837 -
Lja5g3186 469 SMART B3_2 26 116 IPR003340 GO:0003677
Lja5g3186 469 SMART B3_2 346 444 IPR003340 GO:0003677
Lja5g3186 469 MobiDBLite consensus disorder prediction 218 258 - -
Lja5g3186 469 SUPERFAMILY DNA-binding pseudobarrel domain 21 114 IPR015300 -
Lja5g3186 469 Pfam B3 DNA binding domain 36 112 IPR003340 GO:0003677
Lja5g3186 469 Pfam B3 DNA binding domain 347 437 IPR003340 GO:0003677
Lja5g3186 469 ProSiteProfiles B3 DNA-binding domain profile. 346 444 IPR003340 GO:0003677
Lja5g3186 469 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 5 185 IPR044837 -
Lja5g3186 469 Gene3D - 324 446 IPR015300 -
Lja5g3186 469 Gene3D - 20 119 IPR015300 -
Lja5g3186 469 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 313 452 - -
Lja5g3186 469 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 5 185 - -
Lja5g3186 469 CDD B3_DNA 38 114 IPR003340 GO:0003677
Lja5g3186 469 SUPERFAMILY DNA-binding pseudobarrel domain 345 435 IPR015300 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3186 331 442 REM Transcription Factor Family AT4G33280 36.607 2.55e-19 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja5g3186 B3 7.7e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3186 - - gmx:100777709 531.946