Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3173 ATGTTGTCAACAAAATCATTGTTATGGTTGCCGTTGGTGGTGGTGTGCCACTTCACCATCTCATGCAACGCCAACCAACAAGATGAATATCTCTACAAGTTCATCCAGTCACGAAGGTCTCACATGAAGCCTTCACATGGAGAAGCATGGAGTGTTGCAGATGGTGTTAATGGTGTGAATTATCAATATTTTTCTGAGGCACATGTTGAACAGCAGGGACGGACCCAGGTTGCTGATAAGGTGAAGGCTTTGCCGGGACAACCTGGAGTGGATTTTGATCAGTATGCAGGGTACGTTACAGTGAATGCTAAAGCTGGAAGATCACTGTTCTATTACTTTGTTGAGTCACCTCATAATTCTTCCACCAACCCTCTTGTTCTATGGCTAAATGGAGGACCAGGGTGCTCTTCCTTTGGGTATGGAGCCATGCAAGAACTAGGACCTTTTAGAGTCAACAGTGATGGAAAAACTCTTTACAGAAATAAATACGCATGGAACAATGTGGCAAATGTTATATTCCTTGAGTCTCCAGCAGGAGTTGGCTTCTCATATTCAGACAATTCATCAGATTACTCAAACACTGGTGACCACATCACAGCTATAGATTCATACACTTTTCTTCTTCACTGGCTGGAGAGATTCCCACAGTATAAAACAAGAGACCTGTTCATAACCGGTGAAAGCTATGCTGGCCATTATGTCCCTCAGCTTGCTAACATTATACTCTCAAAAAATAAGCTAGACAAGAATCACCCGATAATCAATTTGAAAGGGATAGCGATTGGAAATGGCTGGATTGATGATAAATATTGTAACAAGGGAATGTATGATTATTTCTGGACGCATGGTCTGAACTCTGATGAAACTCGTAAAGGAATTGAAAAGCATTGCGACTTTAAGACTTCCAACTTTACAAGTGAATGCGTCAAATATACAAATAGAGCAGATACTGAGATGGGAAATATTGACATATACAACATATATGCTCCACTTTGCAATTCAACAGAAAGTTCTGCCACCAACTCGGGAAGCGACTTTAACCCTTGTTCTGAAGATTATACAACTACCTACTTAAATCTCCCTGAAGTTCAAGAGGCTCTTCATGCTAAAGCCACAAAATGGTCACCTTGCGGCAATGTGGCATGGACAGATAGCCCGGCAACTATTCTACCCACTATTAAACGGTTAATATCAAGTAGTGGTCTACGAACCTGGATATACAGTGGCGACACAGATGGTCGCGTTCCCATAACATCATCAAGATACTCTGTGAATTCTTTGAAACTTCACGTGGAAACAACATGGCGTCCATGGGGCTCTGGCAATGAGGTTGGAGGATATGTAGTTGGGTACAAAGGACTTACACTTGTTACTGTAAGAGGAGCTGGTCACATGGTTCCAAGTTACCAGCCAAAGAGGGCACTAACCATGATCACTTCTTTTCTTCGTGGAGAACTTCCTCCTAAATTAACCTCTTAA 1479 0.4206 MLSTKSLLWLPLVVVCHFTISCNANQQDEYLYKFIQSRRSHMKPSHGEAWSVADGVNGVNYQYFSEAHVEQQGRTQVADKVKALPGQPGVDFDQYAGYVTVNAKAGRSLFYYFVESPHNSSTNPLVLWLNGGPGCSSFGYGAMQELGPFRVNSDGKTLYRNKYAWNNVANVIFLESPAGVGFSYSDNSSDYSNTGDHITAIDSYTFLLHWLERFPQYKTRDLFITGESYAGHYVPQLANIILSKNKLDKNHPIINLKGIAIGNGWIDDKYCNKGMYDYFWTHGLNSDETRKGIEKHCDFKTSNFTSECVKYTNRADTEMGNIDIYNIYAPLCNSTESSATNSGSDFNPCSEDYTTTYLNLPEVQEALHAKATKWSPCGNVAWTDSPATILPTIKRLISSSGLRTWIYSGDTDGRVPITSSRYSVNSLKLHVETTWRPWGSGNEVGGYVVGYKGLTLVTVRGAGHMVPSYQPKRALTMITSFLRGELPPKLTS* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3173 492 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Lja5g3173 492 PANTHER CARBOXYPEPTIDASE 17 486 - -
Lja5g3173 492 Gene3D - 389 484 - -
Lja5g3173 492 Gene3D - 349 381 - -
Lja5g3173 492 ProSitePatterns Serine carboxypeptidases, histidine active site. 454 471 IPR033124 GO:0004185
Lja5g3173 492 Gene3D alpha/beta hydrolase 76 334 IPR029058 -
Lja5g3173 492 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 173 IPR001563 GO:0004185|GO:0006508
Lja5g3173 492 PRINTS Carboxypeptidase C serine protease (S10) family signature 210 235 IPR001563 GO:0004185|GO:0006508
Lja5g3173 492 PRINTS Carboxypeptidase C serine protease (S10) family signature 454 467 IPR001563 GO:0004185|GO:0006508
Lja5g3173 492 PRINTS Carboxypeptidase C serine protease (S10) family signature 174 184 IPR001563 GO:0004185|GO:0006508
Lja5g3173 492 ProSitePatterns Serine carboxypeptidases, serine active site. 224 231 IPR018202 GO:0004185
Lja5g3173 492 SUPERFAMILY alpha/beta-Hydrolases 82 485 IPR029058 -
Lja5g3173 492 Pfam Serine carboxypeptidase 88 484 IPR001563 GO:0004185|GO:0006508
Lja5g3173 492 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 17 486 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3173 Lja-Chr5 61673909 61680731 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3173 357 485 Calmodulin-binding Proteins AT2G22960 30.882 1.64e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3173 K16297 - gmx:100818983 748.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3173 5 61673909 61680731 Lja5g3173 5 61673909 61680731 ECH