Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3171 ATGGCACTAATGTTATCAACAAAATCACGGTTATGGTTGTTGTTTGTGGCAGTGTCCCACTTCGCCATCTCATGCGACGCGAACCAACAAGGCAAATACCTCTACAAGTTCATTCATTCACGAAGGTCTCAAAAAAAGTCTTCACATGGAGAAGCTTTTGGTGTTAATGGTGTGGATTGTGAATATTTTTCTCAGGCACATGTTGAACAACAAAATAGTGTTGATAAGGTGAAGTCTTTGCCGGGACAACCCCAAGGGGTGGATTTTGATCAGTATGCAGGGTATGTCAGAGTGGATGCCAAGGCGGGGAGATCATTGTTCTATTACTTTGTGGAGTCACCTCACAATTCTTCCACCAACCCTCTTGTTCTTTGGCTAAATGGAGGACCAGGGTGCTCTTCCTTTGGGTATGGAGCCCTGCAAGAATTGGGACCTTTTAGAGTCAATAGTGATGGAAGAACACTTCACAAAAATGAATTTGCATGGAATAATGTGGCAAATGTTATCTTCCTAGAATCTCCAGCAGGAGTTGGCTTTTCATATTCAGACAATTCATCAGATTACTCAAAAACTGGTGACCACAGCACAGCCTTGGATTCATACACTTTTCTTCTTAACTGGCTGGAGAGATTCCCACAGTATAAAACAAGAGAGTTGTTTATAACTGGTGAAAGCTACGCAGGCCATTATGTCCCTCAGCTTGCTCACATTATACTCTCAAAGAATAAGCTAAAGAAAAGTCACACGGTGATCAATTTGAAAGGGGTCGCGATTGGAAATGGCTGGATAGATGATTATTATTGTACAAAGGGAATGTATGACTATTTCTGGACGCATGGTCTAAACTCTGACAAAACTCATAAAGGAATTGAAAAACACTGTAACTTTAAGACTTTCAACCTTACAAGTGAATGCAACAAATACACAAACAAAGCAGATGATGAGATGGGAGATATTGATATATACAACATATATGCTCCAATTTGTAATTCACCAGAAAGTCCTGCCACCTACTTTGGAAACGATTTCAACCCTTGTTCTGAAGATTATACCACTACCTACTTAAATCTCCCTGAAGTTCAAGAGGCTCTTCATGCTAAAGCCACAAAATGGTTATCTTGCAGCGACGTGGGATGGACAGATAGCCCATCAACTATTCTACCCACCATAAAACGGTTAATATCAAGTGGTCTAAGCATCTGGATGTACAGTGGCGACACAGATAGTTCCGTTCCGATAACATCATCAAAGTATTCATTGAATTCCTTAAAACTTCACGTGGACACAAGATGGCGTCCATGGGGCTCTAGCGATGAGGTTGGAGGATATGTAGTTGGGTACAAAGGACTCACGCTCATTACAGTAAGAGGAGCTGGACACATGGTTCCAAGTTCCCAACCAAAGAGAGCACTAACCATGATCACTTCTTTTCTTCGTGGAGAACTTCCTCCTAAACTAAAATCTTGA 1467 0.4131 MALMLSTKSRLWLLFVAVSHFAISCDANQQGKYLYKFIHSRRSQKKSSHGEAFGVNGVDCEYFSQAHVEQQNSVDKVKSLPGQPQGVDFDQYAGYVRVDAKAGRSLFYYFVESPHNSSTNPLVLWLNGGPGCSSFGYGALQELGPFRVNSDGRTLHKNEFAWNNVANVIFLESPAGVGFSYSDNSSDYSKTGDHSTALDSYTFLLNWLERFPQYKTRELFITGESYAGHYVPQLAHIILSKNKLKKSHTVINLKGVAIGNGWIDDYYCTKGMYDYFWTHGLNSDKTHKGIEKHCNFKTFNLTSECNKYTNKADDEMGDIDIYNIYAPICNSPESPATYFGNDFNPCSEDYTTTYLNLPEVQEALHAKATKWLSCSDVGWTDSPSTILPTIKRLISSGLSIWMYSGDTDSSVPITSSKYSLNSLKLHVDTRWRPWGSSDEVGGYVVGYKGLTLITVRGAGHMVPSSQPKRALTMITSFLRGELPPKLKS* 489
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3171 488 Gene3D - 386 480 - -
Lja5g3171 488 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 29 482 IPR001563 GO:0004185|GO:0006508
Lja5g3171 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 158 170 IPR001563 GO:0004185|GO:0006508
Lja5g3171 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 171 181 IPR001563 GO:0004185|GO:0006508
Lja5g3171 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 450 463 IPR001563 GO:0004185|GO:0006508
Lja5g3171 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 207 232 IPR001563 GO:0004185|GO:0006508
Lja5g3171 488 SUPERFAMILY alpha/beta-Hydrolases 77 481 IPR029058 -
Lja5g3171 488 ProSitePatterns Serine carboxypeptidases, histidine active site. 450 467 IPR033124 GO:0004185
Lja5g3171 488 ProSitePatterns Serine carboxypeptidases, serine active site. 221 228 IPR018202 GO:0004185
Lja5g3171 488 PANTHER CARBOXYPEPTIDASE 29 482 - -
Lja5g3171 488 Gene3D alpha/beta hydrolase 72 331 IPR029058 -
Lja5g3171 488 Pfam Serine carboxypeptidase 81 480 IPR001563 GO:0004185|GO:0006508
Lja5g3171 488 Gene3D - 346 377 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lja5g3171 Lja-Chr5 61623960 61629584 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3171 354 481 Calmodulin-binding Proteins AT2G22960 27.068 1.69e-10 58.5
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3171 K16297 - gmx:100818983 736.873