LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja5g3171	ATGGCACTAATGTTATCAACAAAATCACGGTTATGGTTGTTGTTTGTGGCAGTGTCCCACTTCGCCATCTCATGCGACGCGAACCAACAAGGCAAATACCTCTACAAGTTCATTCATTCACGAAGGTCTCAAAAAAAGTCTTCACATGGAGAAGCTTTTGGTGTTAATGGTGTGGATTGTGAATATTTTTCTCAGGCACATGTTGAACAACAAAATAGTGTTGATAAGGTGAAGTCTTTGCCGGGACAACCCCAAGGGGTGGATTTTGATCAGTATGCAGGGTATGTCAGAGTGGATGCCAAGGCGGGGAGATCATTGTTCTATTACTTTGTGGAGTCACCTCACAATTCTTCCACCAACCCTCTTGTTCTTTGGCTAAATGGAGGACCAGGGTGCTCTTCCTTTGGGTATGGAGCCCTGCAAGAATTGGGACCTTTTAGAGTCAATAGTGATGGAAGAACACTTCACAAAAATGAATTTGCATGGAATAATGTGGCAAATGTTATCTTCCTAGAATCTCCAGCAGGAGTTGGCTTTTCATATTCAGACAATTCATCAGATTACTCAAAAACTGGTGACCACAGCACAGCCTTGGATTCATACACTTTTCTTCTTAACTGGCTGGAGAGATTCCCACAGTATAAAACAAGAGAGTTGTTTATAACTGGTGAAAGCTACGCAGGCCATTATGTCCCTCAGCTTGCTCACATTATACTCTCAAAGAATAAGCTAAAGAAAAGTCACACGGTGATCAATTTGAAAGGGGTCGCGATTGGAAATGGCTGGATAGATGATTATTATTGTACAAAGGGAATGTATGACTATTTCTGGACGCATGGTCTAAACTCTGACAAAACTCATAAAGGAATTGAAAAACACTGTAACTTTAAGACTTTCAACCTTACAAGTGAATGCAACAAATACACAAACAAAGCAGATGATGAGATGGGAGATATTGATATATACAACATATATGCTCCAATTTGTAATTCACCAGAAAGTCCTGCCACCTACTTTGGAAACGATTTCAACCCTTGTTCTGAAGATTATACCACTACCTACTTAAATCTCCCTGAAGTTCAAGAGGCTCTTCATGCTAAAGCCACAAAATGGTTATCTTGCAGCGACGTGGGATGGACAGATAGCCCATCAACTATTCTACCCACCATAAAACGGTTAATATCAAGTGGTCTAAGCATCTGGATGTACAGTGGCGACACAGATAGTTCCGTTCCGATAACATCATCAAAGTATTCATTGAATTCCTTAAAACTTCACGTGGACACAAGATGGCGTCCATGGGGCTCTAGCGATGAGGTTGGAGGATATGTAGTTGGGTACAAAGGACTCACGCTCATTACAGTAAGAGGAGCTGGACACATGGTTCCAAGTTCCCAACCAAAGAGAGCACTAACCATGATCACTTCTTTTCTTCGTGGAGAACTTCCTCCTAAACTAAAATCTTGA	1467	0.4131	MALMLSTKSRLWLLFVAVSHFAISCDANQQGKYLYKFIHSRRSQKKSSHGEAFGVNGVDCEYFSQAHVEQQNSVDKVKSLPGQPQGVDFDQYAGYVRVDAKAGRSLFYYFVESPHNSSTNPLVLWLNGGPGCSSFGYGALQELGPFRVNSDGRTLHKNEFAWNNVANVIFLESPAGVGFSYSDNSSDYSKTGDHSTALDSYTFLLNWLERFPQYKTRELFITGESYAGHYVPQLAHIILSKNKLKKSHTVINLKGVAIGNGWIDDYYCTKGMYDYFWTHGLNSDKTHKGIEKHCNFKTFNLTSECNKYTNKADDEMGDIDIYNIYAPICNSPESPATYFGNDFNPCSEDYTTTYLNLPEVQEALHAKATKWLSCSDVGWTDSPSTILPTIKRLISSGLSIWMYSGDTDSSVPITSSKYSLNSLKLHVDTRWRPWGSSDEVGGYVVGYKGLTLITVRGAGHMVPSSQPKRALTMITSFLRGELPPKLKS*	489

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja5g3171	488	Gene3D	-	386	480	-	-
	Lja5g3171	488	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	29	482	IPR001563	GO:0004185\|GO:0006508
	Lja5g3171	488	PRINTS	Carboxypeptidase C serine protease (S10) family signature	158	170	IPR001563	GO:0004185\|GO:0006508
	Lja5g3171	488	PRINTS	Carboxypeptidase C serine protease (S10) family signature	171	181	IPR001563	GO:0004185\|GO:0006508
	Lja5g3171	488	PRINTS	Carboxypeptidase C serine protease (S10) family signature	450	463	IPR001563	GO:0004185\|GO:0006508
	Lja5g3171	488	PRINTS	Carboxypeptidase C serine protease (S10) family signature	207	232	IPR001563	GO:0004185\|GO:0006508
	Lja5g3171	488	SUPERFAMILY	alpha/beta-Hydrolases	77	481	IPR029058	-
	Lja5g3171	488	ProSitePatterns	Serine carboxypeptidases, histidine active site.	450	467	IPR033124	GO:0004185
	Lja5g3171	488	ProSitePatterns	Serine carboxypeptidases, serine active site.	221	228	IPR018202	GO:0004185
	Lja5g3171	488	PANTHER	CARBOXYPEPTIDASE	29	482	-	-
	Lja5g3171	488	Gene3D	alpha/beta hydrolase	72	331	IPR029058	-
	Lja5g3171	488	Pfam	Serine carboxypeptidase	81	480	IPR001563	GO:0004185\|GO:0006508
	Lja5g3171	488	Gene3D	-	346	377	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja5g3171	Lja-Chr5	61623960	61629584	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja5g3171	354	481	Calmodulin-binding Proteins	AT2G22960	27.068	1.69e-10	58.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja5g3171	K16297		-	gmx:100818983	736.873