Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3152 ATGATGGAGGACAGGGATTATTGTTGTTCCACCATGAATTCAACCGCCACAAGAACCAGAATCAGCAGCACCAAAGAGAAAGGGATCACAAAGCAAAACCAATTAGAGAAACCAATGAAACCATACAGAGGGATAAGGATGAGGAAGTGGGGGAAGTGGGTGGCGGAGATCAGAGAGCCCAACAAGAGGTCGAGGATCTGGCTGGGATCCTACACCACCCCTGTCGCCGCCGCACGCGCCTACGACACCGCCGTGTTCTGCCTCAGAGGCCCCTCAGCACGCCTCAACTTCCCGGAATTGCTTTTCCAAGACCAAGATAAGGATGGTGGTGATGGTGATGGCGGTGGCGGTTCCATCCAACAAGGGAACATGTCTGCTGATTCAATACGCAAAAAAGCAACACAAGTTGGTGCTAGAGTGGATGCTCTCCAAACGGCTCTTCATGGTTCTTCACAACACTCCTCTTCCAACACTTCCTCCTTGAAGCCTGATTTGAATGAGTTTCCAAAACCTGAAGAAGATTGCCTTGAAGCACTTCAGGATTGA 546 0.5037 MMEDRDYCCSTMNSTATRTRISSTKEKGITKQNQLEKPMKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFCLRGPSARLNFPELLFQDQDKDGGDGDGGGGSIQQGNMSADSIRKKATQVGARVDALQTALHGSSQHSSSNTSSLKPDLNEFPKPEEDCLEALQD* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3152 181 MobiDBLite consensus disorder prediction 145 164 - -
Lja5g3152 181 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 13 173 - -
Lja5g3152 181 CDD AP2 42 100 IPR001471 GO:0003700|GO:0006355
Lja5g3152 181 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
Lja5g3152 181 MobiDBLite consensus disorder prediction 166 181 - -
Lja5g3152 181 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Lja5g3152 181 PRINTS Ethylene responsive element binding protein signature 80 100 IPR001471 GO:0003700|GO:0006355
Lja5g3152 181 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
Lja5g3152 181 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 13 173 - -
Lja5g3152 181 MobiDBLite consensus disorder prediction 103 181 - -
Lja5g3152 181 Pfam AP2 domain 42 90 IPR001471 GO:0003700|GO:0006355
Lja5g3152 181 PIRSF PTI6 3 103 IPR017392 GO:0003700
Lja5g3152 181 PIRSF PTI6 123 170 IPR017392 GO:0003700
Lja5g3152 181 SUPERFAMILY DNA-binding domain 41 99 IPR016177 GO:0003677
Lja5g3152 181 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3152 Lja-Chr5 61407233 61408296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3152 36 172 AP2-EREBP Transcription Factor Family AT2G23340 55.333 1.70e-48 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja5g3152 AP2 2.8e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3152 K09286 - gmx:547642 216.853