Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3151 ATGGCGCAGATTCAGGTGCAGCATCAAACTCCTCCGGTTGCCGCTGGTCCGGCTACTCCCAACGGCGCCGCTGGCGGTGTGGCTCCGGCCCCGAACGCGAACTTCGTGACGACGTCGTTGTACGTTGGGGATCTTGACCAGAATGTCAACGATTCGCAGCTCTACGATCTGTTCAACCAGGTTGGACAAGTCGTTTCTGTTAGGGTTTGCAGGGACTTGACCACTCGCCGCTCACTCGGTTATGGCTATGTGAATTTCAGCAACCCTCCTGATGCTGCAAGGGCATTGGATGTGCTGAATTTCACTCCACTGAACAACAGGCCTATTAGGGTCATGTATTCCCATCGGGATCCTAGTATCCGTAAGAGTGGTACTGCTAATATTTTTATCAAGAATTTGGACAAGGCAATTGATCACAAAGCGTTACATGATACTTTTTCTTCTTTTGGAAGTATTCTTTCCTGCAAGATTGCAACTGATGCCTCGGGCCAGTCCAAAGGCTATGGCTTTGTTCAGTTTGACACTGAGCAATCTGCGCAGAATGCGATTGATAAGTTGAATGGCATGCTGATCAATGATAAGCAGGTTTACGTAGGTCATTTCCTACGCAAGCAGGATAGAGATAATGTTCTCTTTAAGTCAAAGTTCAATAATGTTTATGTGAAGAACCTCTCGGATTCATTTACTGATGAGGAGCTGAGGAATGTTTTTGGAGAGCATGGAACCATTACCAGTGCTGTTGTAATGAGAGATGCTGATGGTAGGTCAAAGTGTTTTGGGTTTGTCAATTTTGAAAGCCCAGATGATGCTGCCAAAGCTGTTGAGGCACTGAATGGGAAAAAGTTTGATGACAAGGAGTGGTATGTTGGAAAAGCCCAGAAGAAGTCTGAACGAGAGGTTGAACTGAAAGGAAAATTCGAGCAGACTGTTAAGGAAACTGTTGATAAGTACCAAGGTGTGAACTTGTATCTGAAGAACTTGGATGACTCCATCACAGATGAAAATCTGAAAGAACTGTTCTCTGAGTTTGGTACAATAACTTCATTCAAGATCATGCGAGACCCAACCGGAATAAGTAGAGGATCGGGATTTGTTGCATTTTCAACTCCTGAGGAAGCATCACGAGCTCTCGGTGAGATGAATGGCAAAATGATTTCCGGCAAGCCTCTGTATGTTGCCCTTGCTCAGAGAAAAGAAGATAGAAGAGCAAGATTACAGGCACAATTTTCACAGATGAGGCCTGTTGCAATTTCACCTTCTGTTGCGCCCCGCATGCCAATCTACCCTCCTGGTGCTCCTGGTCTAGGGCAACAATATTTGTATGGGCAAGGCCCCCCAGCCATGATTCCTCAACAGGCTGGATTCGGATACCAGCAGCAACTCATGCCTGGGATGAGGCCTGGTGGCGCTCCAATGCAGAGCTTCTTTGTTCCAATGGTTCAGCAGGGCCAACAAGGCCAGCGCCCAGGAGGACGCCGAGCAGGTCATGTTCAGCAACCCCAGCAGCCAATGCCTATGATGCAGCAGCAGATGCTTCCAAGGGGACGTGTTTATCGTTACCCCCCTGGTCGCAACATGCAAGACGGACCTATGCAAGGTGTAGCTGGAGGAATGATGTCAGTCCCTTATGACATGGGTGGTCTTCCAATCCGCGATCCTGTGGGACAGCCGATGCCCATTCAGGCTTTGGCTACAGCTCTAGCAAATGCTCCCCTTGAGCAACAGAGAACTATGCTTGGTGAAGCTTTATACCCGCTAGTTGATCAGCTGGAACATGATTCAGCAGCTAAGGTTACAGGCATGCTTTTGGAGATGGACCAGCCTGAAGTGTTGCATCTGATTGAGTCACCTGATGCTCTGAAGGCTAAAGTTGCTGAAGCCTTGGATGTGTTGAGAAATGTTGCTCAACAGCAAGCCAACAACCCGGCCGATCAACTCGCATCACTCTCTCTCAATGACAATCTTGCGTCTTAG 1974 0.4807 MAQIQVQHQTPPVAAGPATPNGAAGGVAPAPNANFVTTSLYVGDLDQNVNDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNFSNPPDAARALDVLNFTPLNNRPIRVMYSHRDPSIRKSGTANIFIKNLDKAIDHKALHDTFSSFGSILSCKIATDASGQSKGYGFVQFDTEQSAQNAIDKLNGMLINDKQVYVGHFLRKQDRDNVLFKSKFNNVYVKNLSDSFTDEELRNVFGEHGTITSAVVMRDADGRSKCFGFVNFESPDDAAKAVEALNGKKFDDKEWYVGKAQKKSEREVELKGKFEQTVKETVDKYQGVNLYLKNLDDSITDENLKELFSEFGTITSFKIMRDPTGISRGSGFVAFSTPEEASRALGEMNGKMISGKPLYVALAQRKEDRRARLQAQFSQMRPVAISPSVAPRMPIYPPGAPGLGQQYLYGQGPPAMIPQQAGFGYQQQLMPGMRPGGAPMQSFFVPMVQQGQQGQRPGGRRAGHVQQPQQPMPMMQQQMLPRGRVYRYPPGRNMQDGPMQGVAGGMMSVPYDMGGLPIRDPVGQPMPIQALATALANAPLEQQRTMLGEALYPLVDQLEHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEALDVLRNVAQQQANNPADQLASLSLNDNLAS* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3151 657 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 320 397 IPR000504 GO:0003723
Lja5g3151 657 SUPERFAMILY PABC (PABP) domain 501 650 IPR036053 GO:0003723
Lja5g3151 657 PANTHER RNA BINDING PROTEIN 27 641 - -
Lja5g3151 657 CDD RRM1_I_PABPs 39 118 - -
Lja5g3151 657 SMART rrm2_1 39 112 IPR003954 GO:0003676
Lja5g3151 657 SMART rrm2_1 127 199 IPR003954 GO:0003676
Lja5g3151 657 SMART rrm2_1 321 393 IPR003954 GO:0003676
Lja5g3151 657 SMART rrm2_1 218 290 IPR003954 GO:0003676
Lja5g3151 657 SMART poly_2 571 634 IPR002004 GO:0003723
Lja5g3151 657 Gene3D - 555 638 - -
Lja5g3151 657 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Lja5g3151 657 PANTHER POLYADENYLATE-BINDING PROTEIN 27 641 - -
Lja5g3151 657 SUPERFAMILY RNA-binding domain, RBD 316 414 IPR035979 GO:0003676
Lja5g3151 657 SMART rrm1_1 39 112 IPR000504 GO:0003723
Lja5g3151 657 SMART rrm1_1 321 393 IPR000504 GO:0003723
Lja5g3151 657 SMART rrm1_1 127 199 IPR000504 GO:0003723
Lja5g3151 657 SMART rrm1_1 218 290 IPR000504 GO:0003723
Lja5g3151 657 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 559 636 IPR002004 GO:0003723
Lja5g3151 657 MobiDBLite consensus disorder prediction 1 26 - -
Lja5g3151 657 CDD RRM3_I_PABPs 216 295 - -
Lja5g3151 657 CDD RRM2_I_PABPs 124 200 IPR045305 -
Lja5g3151 657 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 126 203 IPR000504 GO:0003723
Lja5g3151 657 Gene3D - 208 305 IPR012677 -
Lja5g3151 657 Pfam Poly-adenylate binding protein, unique domain 567 631 IPR002004 GO:0003723
Lja5g3151 657 Gene3D - 306 404 IPR012677 -
Lja5g3151 657 SUPERFAMILY RNA-binding domain, RBD 215 301 IPR035979 GO:0003676
Lja5g3151 657 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 217 294 IPR000504 GO:0003723
Lja5g3151 657 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 39 632 IPR006515 GO:0003723
Lja5g3151 657 Gene3D - 18 119 IPR012677 -
Lja5g3151 657 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 322 390 IPR000504 GO:0003723
Lja5g3151 657 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 128 196 IPR000504 GO:0003723
Lja5g3151 657 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 219 287 IPR000504 GO:0003723
Lja5g3151 657 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 110 IPR000504 GO:0003723
Lja5g3151 657 SUPERFAMILY RNA-binding domain, RBD 38 207 IPR035979 GO:0003676
Lja5g3151 657 CDD RRM4_I_PABPs 319 397 - -
Lja5g3151 657 Gene3D - 120 207 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3151 Lja-Chr5 61385445 61390932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3151 37 655 Eukaryotic Initiation Factors Gene Family AT1G49760 69.889 0.0 853
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3151 K13126 - gmx:100784442 1068.91