Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3150 ATGCAGCATGCGTTATCTTCTCTACCACCAGGTTTTCAGTTCTTCCCCTCAGAGGAAATTCTCCTCAACTACTACTTGATCAACAAGAATCAAGGTCAGGATTTCGATGGTGCTAATTTGATCACAGAACTGGAGCTTTTTGAATATGACCCGTTCGACTTGCCTGACTCTACAAGCTTTGCTTATGATCATAGAGGGAGGAAGAGGCATTGGTACTATTTCACCGAAAGAGATATGCATAGGAACAAGATGACTATGAGTGGCTTCTGGCTTAGGGATGGAAGGGTTCAGATCCCTTCCAGTGGCGCTGGAAATGTGGTTTTGGGCACCAGGACCAGCTTCATTTTCCACACCGGAAAATCCATAAAAAATGTTGCAAGGACCAATTGGACTCTTTATGAGTATGCCCTGGCTGATCATCAGGCTCCTTTTGTTCTTTGTCGTGTATTTCGTAAGCCTCGTAAGAATTCTTCATTGGAGATTGCTTTGAGTTCAGAGACTGGATCGTCAGTTCGCCACATAGGTATTCAGCACGATGGAGGTGTGGAGTATAATGTTGATAATGATGGTGCTCCAACAGATGTTAATGAAGTTGAGAATGTGCCAATACCTGGTTTTCCTCATGATAGTCCGCAGGAAATTAATTCCTCCTCCGGGTTCGAACCCGGAACCCTTCACCCTTCATCCCACCAAACCCTTATGTCCCTAGCTCTTACCACTTGA 723 0.4481 MQHALSSLPPGFQFFPSEEILLNYYLINKNQGQDFDGANLITELELFEYDPFDLPDSTSFAYDHRGRKRHWYYFTERDMHRNKMTMSGFWLRDGRVQIPSSGAGNVVLGTRTSFIFHTGKSIKNVARTNWTLYEYALADHQAPFVLCRVFRKPRKNSSLEIALSSETGSSVRHIGIQHDGGVEYNVDNDGAPTDVNEVENVPIPGFPHDSPQEINSSSGFEPGTLHPSSHQTLMSLALTT* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3150 240 Pfam No apical meristem (NAM) protein 9 137 IPR003441 GO:0003677|GO:0006355
Lja5g3150 240 PANTHER NAC DOMAIN-CONTAINING PROTEIN 21/22-LIKE ISOFORM X1 6 189 - -
Lja5g3150 240 MobiDBLite consensus disorder prediction 200 240 - -
Lja5g3150 240 MobiDBLite consensus disorder prediction 210 240 - -
Lja5g3150 240 Gene3D NAC domain 17 157 IPR036093 GO:0003677|GO:0006355
Lja5g3150 240 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 6 189 - -
Lja5g3150 240 SUPERFAMILY NAC domain 4 152 IPR036093 GO:0003677|GO:0006355
Lja5g3150 240 ProSiteProfiles NAC domain profile. 8 152 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3150 Lja-Chr5 61331147 61333815 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3150 4 152 NAC Transcription Factor Family AT3G49530 31.288 1.39e-24 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja5g3150 NAM 3.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3150 - - adu:107495754 196.438