Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3149 ATGCAAGGGCAGAGAGGTACACTTGGTTCCTTGGCTGAAACACTAGAATTTGAGTTTGAGTATGGACCTACTCAAGGTACTGCTGCAGCAGATCAGCATAGTTTCTGGAATAATATACTTTCCCCCACTGATATGAATCCATCTTATATCAATTCTGTCAACCATGAATGGCAAAACTTGAGTGGATGGAGCTTAGGTGAGCCCAGTTCCAGTAATACTCTGAATGAGGTTAACACCAATGAGCAGAAAAGGGAGCTAGGATTATCTTCTTCAATGAATGCTGGTGCTATAGGTGGTCCAAGACTGGAACAAAGGCGCTTGGAACCAACCAACGCTTTTTCATTGGACAATGTCAACTCAAGTCCTATGTATATAAGCAACTCCAATTCTCATTTGGTGTCGCAGAATCTCAACTTAAATGCTGGTTTGCCAGATAGTGGCAGTGGTAATAGCTATCATGTGGAGCATCCAAACTTGCACAAGTCTAGTGTACCTAATGTACCGGTAAATGAGCATATTCCACCTGCTATTGGTTCTGGTTCTTTTCTGCAACCGTCTGGAAGTAACAACATGTTTGTTGAGGATACTGATGGTAGGCCAGGTTATTCTCTTGACACCCGTCGTGTATCTTGTAAAAGAAAGGCAATTGAACGAAGTGTTGGACAATCTTCAGATGGCGGAAGTTCTGGCTATACTCAGCATACAGATGGTAGCGCATGGAACATTCTTCCTACTCAGGATTATGCAGGGAGCATTTTTAACAGATCTGCACCAGCAGAACAGGCCAATGCAAGACTTGGACTGAGTATGGGGGGTGGAGCCTCTGAAAGCATTCCTGAATCAAATGTTGCAGGAAGCTCAGAAAGCTTCCACAGAAATTTCCGTTTGAGGGTGAATCCTTCAAGCCAACAAATTCCTGTTCCTCCCACTACATTCTCGAATGGGAGTGTGATCAGGAATTCTGCTGTTCCTTCATCCCTGCCAGTATTCCAACGGTTTCATCCTGTTGATAATTCTCAGGACTTGAGGCCAGTACCACCGGCAGTACGACCGGCTGATGCCATGATTCCTCAAAGCCAGCCCCTTCGGATTCGTGATTTACAAAGAAATATAGAGTCATTCAGGCGGAGTGGTGGTTCTAGCTCAACAAACAACCATTCACCGAACCCTGTTATATCTGCAAACAGGGATCCTCGGCCGAATGAGGAAGGGAGCTCAAGAAATATGCCTCGGAACATTTTAGAACACCCAGTCTTCGTACCTCCTACCAATATAAGAAATGTGGTTCGAAATCCAACTAGAGCTCCAAGTAGTGCAAATGTAAGCATTCCTGGAAATGTTGCTCCTTCAAGCATTCCTGGAAATGTTGCTCCTTCAAGCATTCCTGGAAATGTTGCTTCTTCAAGTATTCCTGGAAACATTGCTCCTGCAAGAATTCCTGGAAACATTGCTCCTGCAAGTGTTCCTGGAAATGTTGCTCCTTCAAGTATTCCTGGAAACGTTGCTCCTTCATTGCGGACTGGTTTAAATTCAACTATTAATTCATCAGCTGCCTCGGCTTGGGTTTCTCGTCCCAATCCTCAGCAGTATCCTCGTAGGTTATCTGAATATGTTCGTCGGTCCTTATTTTCCCCTGGTTCTGAAGCTGCTGGAAGTCCAAGCAATAACTATTCTTCTTTGCATGGTCCTCCTACTTCATCTGAATCAAGGGGACCGTCATCTGGGGTTAACCCAGGAGCAGCTTCATGGTTGGAGAGGTCAGCTGATAGTGAGTTTGGAATTCCCCAATCCTTACGATCTTTGGCTGTTGCCGGTGAAGGAGGCAATAGACTTGTATCTGAGCTCCGCAATGTATTGGGCCTCATGCGTAGGGGTGGGAACCTGCGACTTGAGGATGTTATGATCCTCGACCAGTCAATGTTTGCTGGAATTGCTAATATTCATGACCGACACAGGGATATGCGACTTGATGTCGATAACATGTCTTATGAGGAATTATTGGCTCTGGAAGAACGCATTGGAAATGTGAATACTGGATTGACTGAGGAGACCATAATGAAACTTCTGAAACAGAAGAAATATTCGGCTGAACCAGGATCTCAGGGTGATGCAGAACCCTGCTGTGTTTGTCAGGAGGAGTACAATGATGGAGATGATATCGGATCGCTCAATTGCGGGCATTTTTACCATACTGGGTGTATTAAACAGTGGCTAATGCATAAGAACCTGTGTCCCATTTGTAAGACAACAGGGTTGGCAAAATGA 2265 0.4486 MQGQRGTLGSLAETLEFEFEYGPTQGTAAADQHSFWNNILSPTDMNPSYINSVNHEWQNLSGWSLGEPSSSNTLNEVNTNEQKRELGLSSSMNAGAIGGPRLEQRRLEPTNAFSLDNVNSSPMYISNSNSHLVSQNLNLNAGLPDSGSGNSYHVEHPNLHKSSVPNVPVNEHIPPAIGSGSFLQPSGSNNMFVEDTDGRPGYSLDTRRVSCKRKAIERSVGQSSDGGSSGYTQHTDGSAWNILPTQDYAGSIFNRSAPAEQANARLGLSMGGGASESIPESNVAGSSESFHRNFRLRVNPSSQQIPVPPTTFSNGSVIRNSAVPSSLPVFQRFHPVDNSQDLRPVPPAVRPADAMIPQSQPLRIRDLQRNIESFRRSGGSSSTNNHSPNPVISANRDPRPNEEGSSRNMPRNILEHPVFVPPTNIRNVVRNPTRAPSSANVSIPGNVAPSSIPGNVAPSSIPGNVASSSIPGNIAPARIPGNIAPASVPGNVAPSSIPGNVAPSLRTGLNSTINSSAASAWVSRPNPQQYPRRLSEYVRRSLFSPGSEAAGSPSNNYSSLHGPPTSSESRGPSSGVNPGAASWLERSADSEFGIPQSLRSLAVAGEGGNRLVSELRNVLGLMRRGGNLRLEDVMILDQSMFAGIANIHDRHRDMRLDVDNMSYEELLALEERIGNVNTGLTEETIMKLLKQKKYSAEPGSQGDAEPCCVCQEEYNDGDDIGSLNCGHFYHTGCIKQWLMHKNLCPICKTTGLAK* 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3149 754 SUPERFAMILY RING/U-box 706 750 - -
Lja5g3149 754 Pfam Ring finger domain 707 748 IPR001841 -
Lja5g3149 754 MobiDBLite consensus disorder prediction 544 581 - -
Lja5g3149 754 MobiDBLite consensus disorder prediction 547 576 - -
Lja5g3149 754 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 670 751 IPR013083 -
Lja5g3149 754 MobiDBLite consensus disorder prediction 221 239 - -
Lja5g3149 754 MobiDBLite consensus disorder prediction 374 413 - -
Lja5g3149 754 MobiDBLite consensus disorder prediction 215 239 - -
Lja5g3149 754 CDD RING-H2_TTC3 706 748 - -
Lja5g3149 754 SMART ring_2 707 747 IPR001841 -
Lja5g3149 754 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 495 754 - -
Lja5g3149 754 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 457 - -
Lja5g3149 754 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 495 754 IPR045191 GO:0061630
Lja5g3149 754 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 457 IPR045191 GO:0061630
Lja5g3149 754 ProSiteProfiles Zinc finger RING-type profile. 707 748 IPR001841 -
Lja5g3149 754 MobiDBLite consensus disorder prediction 374 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3149 Lja-Chr5 61311668 61317777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3149 599 752 C3H Transcription Factor Family AT2G15530 60.759 1.16e-61 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3149 - - lja:Lj0g3v0173889.1 1468.37