Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3148 ATGGAAGGTGGCAGCAGTAATTTACACCGAACACAACCACCACCTTTAACAAGAGCCTCACCTCCTGATTCTGAAGACTTCACCACCTTGTTCAACCACCTCCTCCACCACCCTCCGCCACCAGATATGGATCCGCATAATTCCGGGTCTGGTTTCAATTTCTCAGATCCTTATGTGAATAATGCTTGCTTCCCTGACCCTCATGATATCACTTCCTTCAAACAACACCAGAATTTCACTTCTATTGAGAATGTTGCTGAGGCTTCAGAGTTGCCATCAAATTCTGTCCCACGACCACGTTCTTCTTCATCAAAGAGGAGCAGAGCTGCAGAGTTCCATAATTTGTCTGAAAAGAGAAGGAGGAGTAAGATTAACGAGAAAATGAAAGCCTTGCAGAATTTAATTCCAAATTCTAACAAGACTGACAAAGCTTCAATGCTGGATGAAGCCATAGAATACTTAAAGCAGCTTCAGCTTCAAGTGCAAATGTTAATGATGAGAAATGGTTTGAGCTTGCATCCAATGTCTTTATCAGGAGGATTACGGCCTTCGATATTTCCCCAGACCGGGTTGAATATTGATGAAGGTAATGGATTTCGGAATTCTGTCAGTGCAAATGATGAGAGTTTGGTTCGGTCTGCTTTTAGTTTTCCAGAGCATTGCAGCATCTCAAATCAGTCCATACCCTCAGTTACAAACATAGCTACTTTGGATACATCATCAAGTTTTCAACTCTCCATTAAGGATGCACTCGGCAGCAACATGCCACAAATGTTTCTGGATACAGCAAAGATTGGAAAGCCCCCTTCTCCAGATTTATCCTAA 825 0.4255 MEGGSSNLHRTQPPPLTRASPPDSEDFTTLFNHLLHHPPPPDMDPHNSGSGFNFSDPYVNNACFPDPHDITSFKQHQNFTSIENVAEASELPSNSVPRPRSSSSKRSRAAEFHNLSEKRRRSKINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMMRNGLSLHPMSLSGGLRPSIFPQTGLNIDEGNGFRNSVSANDESLVRSAFSFPEHCSISNQSIPSVTNIATLDTSSSFQLSIKDALGSNMPQMFLDTAKIGKPPSPDLS* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3148 274 Pfam Helix-loop-helix DNA-binding domain 112 158 IPR011598 GO:0046983
Lja5g3148 274 MobiDBLite consensus disorder prediction 1 51 - -
Lja5g3148 274 PANTHER TRANSCRIPTION FACTOR SPATULA 61 252 - -
Lja5g3148 274 CDD bHLH_AtPIF_like 109 170 - -
Lja5g3148 274 MobiDBLite consensus disorder prediction 104 119 - -
Lja5g3148 274 MobiDBLite consensus disorder prediction 86 119 - -
Lja5g3148 274 MobiDBLite consensus disorder prediction 86 103 - -
Lja5g3148 274 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 61 252 IPR031066 -
Lja5g3148 274 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 108 157 IPR011598 GO:0046983
Lja5g3148 274 Gene3D - 103 167 IPR036638 GO:0046983
Lja5g3148 274 SMART finulus 114 163 IPR011598 GO:0046983
Lja5g3148 274 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 105 168 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3148 Lja-Chr5 61300758 61303463 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3148 108 179 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 87.500 1.81e-36 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja5g3148 HLH 3.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3148 - - gmx:102668194 288.5