Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3146 ATGAACACCATCAACTCAGCAAACTTGAATGATGACAAGATGCACACTATGCCGATGTGGATGCACCATTCCCCTGAATCCCCTGCATCTCACGGCAACAACAACAACACAGTGACAAGTTTTCCACCGCCACAAATATTCTCTTCCGCAACTTCAATCAATAACAATAACCCTCCAACTCCTTGGTCTACCTTCACTCATCACTTCCCATCATCAACCACACCCTCTTTCCCTAATAAACTCTATACTTTTATGACCCCTGTTCTTCCAGAACAAGATCATCACCAAACCCCAGAAGAACCCAAGTTGCTGAATTCAGAGAAAAGCAGCTCGATGGCGGCGATGAGGGAGATGATATTCAGGATGGCGGCGATGCAACCGGTTGTAATAGACTCAGAGTCAGTGAAGCCGCCGAAGCGGAGGAACGTGAAGATCTCAAAGGACCCTCAGAGCGTGGCGGCGAGGCTCCGGCGAGGGAGGATCAGCGAGAGGATCAGGATACTGCAGAGGATGGTCCCTGGTGGAACCAAGATGGACACTGCTTCTATGCTTGATGAAGCAATTCACTACCTCAAGTTTCTCAAGAAGCAGGTTCAGTCGCTGCAGAGACTAACCGCCGCTAATAGCTGCAGAGACTAA 639 0.4914 MNTINSANLNDDKMHTMPMWMHHSPESPASHGNNNNTVTSFPPPQIFSSATSINNNNPPTPWSTFTHHFPSSTTPSFPNKLYTFMTPVLPEQDHHQTPEEPKLLNSEKSSSMAAMREMIFRMAAMQPVVIDSESVKPPKRRNVKISKDPQSVAARLRRGRISERIRILQRMVPGGTKMDTASMLDEAIHYLKFLKKQVQSLQRLTAANSCRD* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3146 212 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 145 194 IPR011598 GO:0046983
Lja5g3146 212 Pfam Helix-loop-helix DNA-binding domain 155 194 IPR011598 GO:0046983
Lja5g3146 212 Coils Coil 184 204 - -
Lja5g3146 212 CDD bHLH_AtIND_like 146 202 - -
Lja5g3146 212 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 149 206 IPR036638 GO:0046983
Lja5g3146 212 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 11 208 - -
Lja5g3146 212 SMART finulus 151 200 IPR011598 GO:0046983
Lja5g3146 212 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 11 208 IPR045843 GO:0003700|GO:0006355
Lja5g3146 212 Gene3D - 144 210 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3146 Lja-Chr5 61283566 61284408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3146 109 209 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 79.208 1.05e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja5g3146 HLH 3.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3146 - - gmx:100788158 186.422