Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3142 ATGGACGGTTACGATGGAACGGTTAGGCTCGGTGCCATTCACCTGAAGCACAACGATCGCGCCGCCGGCGACTTTGACTCCGGCCCCGACGTCTCCGTTTCTTCTCCGGTCACGCGGCAGAAAGCCGCCGCTGCTAAGCAATTCATCGAGAATCATTACAAGAATTATCTTCAAGGTTTGCAGGATCGCAAGGACAGACGTAGAGCACTTCAAAGGAAAGTGCAGGAATCTCAAGTATCAGCTGAAGAGCAGGAGGAGATGATGAGGAATTTGGCGCGCAGAGAAACTGAGTACATGAGGCTTCAGAGACGGAAGATTGGAATTGACGACTTCGAGCAATTGACGGTGATTGGTAAAGGTGCTTTTGGTGAGGTGAGGTTATGTCGCGCTAAAGATACAGGAGAGATTTTTGCCATGAAGAAATTGAAGAAATCAGATATGCTTAGCCGTGGACAGGTAGAACATGTACGATCTGAGAGGAACTTGCTGGCAGAGGTTGATAGCAGATGTATAGTAAAACTTCATTATTCATTCCAAGATTCGGATTTCCTATATCTCATCATGGAATATTTACCTGGAGGTGACATTATGACATTGTTAATGAGAGAAGATATCCTTTCTGAAGATGTTGCTCGTTTCTACATTGCTGAAAGCATTCTTGCGATCCACTCAATACATCAACACAACTATGTACATAGGGATATAAAACCAGATAACCTGATACTGGATAAAAATGGCCATTTGAAGCTTTCAGACTTCGGCTTATGTAAGCCTCTTGATGATAAGTATTCAACAATTTTATTGGAAAACGAAGATTTTACTGATCAAGAATCAACTAGTGAATTTTCTGCCTCACCTTGGTTGATGCCAAAGGAACAATTACAACAGTGGAAACGTAACCGCCGAGCATTGGCATATTCAACCGTTGGAACTCTTGATTATATGGCACCTGAAGTTTTGCTCAAGAAGGGATATGGAATAGAATGTGATTGGTGGTCTCTTGGGGCAATCATGTATGAGATGCTTATTGGCTACCCTCCATTTTGTTCTGACGATCCAAGGATGACTTGCCGTAAGATTGTTAACTGGAAAACATGCCTGAAATTCCCCGATGAACCCAAAATATCAGCTGAGGCTAAGGATCTGATCTGTCGCTTACTGTGTGATGTTGACACAAGACTAGGAACCAGGGGAGCAGAAGAAATGAAGGCTCATCCATGGTTCAAGTGTACTCAGTGGGACATGCTTTATGAAATGGAAGCTGCATTTAAACCTACAGTCAATGGAGACTTGGACACACAAAACTTTGAGAAGTTTCCAGATGTAGACGGCCCACCATCTTCAACAACAACCGTGGGACCTTGGCGAAAGATGCTGACATCCAAAGACAATAATTTCATTGGATATACTTATAAGAAGTCAGACATCCTTAAATCACTTGAAAGTTCAGATGCAGATATCAGAGTAAACGGATCATCAAATGCCCCTTCATTGATTTCTTTGTTAGGTCGGATTGATTTGCAAGATACTTCAATTCCAGAAAATGAGCAGAAGCCAGAGGCTTGA 1566 0.4278 MDGYDGTVRLGAIHLKHNDRAAGDFDSGPDVSVSSPVTRQKAAAAKQFIENHYKNYLQGLQDRKDRRRALQRKVQESQVSAEEQEEMMRNLARRETEYMRLQRRKIGIDDFEQLTVIGKGAFGEVRLCRAKDTGEIFAMKKLKKSDMLSRGQVEHVRSERNLLAEVDSRCIVKLHYSFQDSDFLYLIMEYLPGGDIMTLLMREDILSEDVARFYIAESILAIHSIHQHNYVHRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSTILLENEDFTDQESTSEFSASPWLMPKEQLQQWKRNRRALAYSTVGTLDYMAPEVLLKKGYGIECDWWSLGAIMYEMLIGYPPFCSDDPRMTCRKIVNWKTCLKFPDEPKISAEAKDLICRLLCDVDTRLGTRGAEEMKAHPWFKCTQWDMLYEMEAAFKPTVNGDLDTQNFEKFPDVDGPPSSTTTVGPWRKMLTSKDNNFIGYTYKKSDILKSLESSDADIRVNGSSNAPSLISLLGRIDLQDTSIPENEQKPEA* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3142 521 PANTHER SERINE/THREONINE-PROTEIN KINASE 28 507 - -
Lja5g3142 521 ProSitePatterns Protein kinases ATP-binding region signature. 117 140 IPR017441 GO:0005524
Lja5g3142 521 ProSiteProfiles Protein kinase domain profile. 111 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g3142 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Lja5g3142 521 Pfam Protein kinase C terminal domain 427 471 IPR017892 GO:0004674|GO:0005524|GO:0006468
Lja5g3142 521 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 28 507 - -
Lja5g3142 521 Gene3D Phosphorylase Kinase; domain 1 108 437 - -
Lja5g3142 521 CDD STKc_NDR_like 109 472 - -
Lja5g3142 521 SUPERFAMILY Protein kinase-like (PK-like) 87 461 IPR011009 -
Lja5g3142 521 Coils Coil 67 104 - -
Lja5g3142 521 SMART pkinase_C_6 409 473 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lja5g3142 521 SMART serkin_6 111 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g3142 521 ProSiteProfiles AGC-kinase C-terminal domain profile. 409 481 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lja5g3142 521 Pfam Protein kinase domain 111 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g3142 521 Gene3D Transferase(Phosphotransferase) domain 1 195 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3142 Lja-Chr5 61216880 61224323 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3142 1 509 AGC Kinase Gene Family AT5G09890 77.670 0.0 840
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Lja5g3142 Pkinase 3.8e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3142 K08790 - gmx:100781770 958.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3142 5 61216880 61224323 Lja5g3142 5 61216880 61224323 ECH