Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3122 ATGGCTATAGAGCTTATAACAGGTTATGGGGGTGATAGCTTTGAAGGAAGAAGCAGTGTCAGAGATAGCAATGCAATTTCAGTGGAAGAAGCAGCTTCTGCTGGTATTCATAGCGTGGAGAAGCTCATGAACATGATTTCAGAACAGAAAAATCATCATCAACCTCAACAAGAAGAACAGGGTAATGATAACAATGGTTCTGAACTTGGAACTGTTGTTGACATGGCTGTGAAGAGGTTCAGAGAGATGATTTCTCTCCTTGACAAGCCAAGAACTGGTCACGCTCGTTTCAGAAGAGCTCCTCCACCAACAGTACAATCTGTTCCTCTTCTTCAATTGCAGCAAACGGTGGAGGAAAATTCAAAACCCAAAACCCCTTTTTCTTCTTCTCTTGTGAAGCCAGAACAGGGGAAAACAGAGCAAGTCTCTGCTTTCAAGGCTTATTGCCGCACCCCACTTATACGCCACCCTCCTCCACCGCTGCAAAATCACCACCACCACCCTTTGCATCAACCTTTGCCACCGCCAGAGAAGAATGAAGCTCGTGGTTCTGTGAATTTTTCGGTTTCACCATCAGTTTCTGCTGCTAACTCGTATATCTCAACGTTAACAGGGGAGAGTGAAGGTTTTCAACGACCCTGTCGTTCTTCTGGGTTCCAGATTACTCATGTGTCCCTGCAAGGAAATTCTTATATGGGTAAACCGCCACTGTCTTCAAATTCTATGAAGAGGAAGTGCAATTCTATGGAATTTCCTGGTATCAAATGTGGATCTTCCTCTGCACAGTGTCATTGCTCCAAGAAAAGGAAATTGAAGTTGAAGCGAGTGATAAGAGTGGCAGCTATTAGTTCTAAAACTGCTGATATCCCACCTGATGAATATTCCTGGAGAAAATATGGACAGAAACCCATCAAGGGCTCTCCTCATCCTAGAGGTTATTACAAGTGCACCAGCGTGAGAGGATGCCCTGCACGCAAACATGTGGAGCGCGCTGTAGACGATTCCAACATGCTTGTGGTCACCTACGAAGGAGAACATAATCACTCGCACACAGCATCTGAGGTGGCTGCAAATGTTGGTGTTCCTAAATCATCGTCTTAG 1101 0.4505 MAIELITGYGGDSFEGRSSVRDSNAISVEEAASAGIHSVEKLMNMISEQKNHHQPQQEEQGNDNNGSELGTVVDMAVKRFREMISLLDKPRTGHARFRRAPPPTVQSVPLLQLQQTVEENSKPKTPFSSSLVKPEQGKTEQVSAFKAYCRTPLIRHPPPPLQNHHHHPLHQPLPPPEKNEARGSVNFSVSPSVSAANSYISTLTGESEGFQRPCRSSGFQITHVSLQGNSYMGKPPLSSNSMKRKCNSMEFPGIKCGSSSAQCHCSKKRKLKLKRVIRVAAISSKTADIPPDEYSWRKYGQKPIKGSPHPRGYYKCTSVRGCPARKHVERAVDDSNMLVVTYEGEHNHSHTASEVAANVGVPKSSS* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3122 366 PANTHER WRKY TRANSCRIPTION FACTOR NTEIG-D48 20 358 - -
Lja5g3122 366 MobiDBLite consensus disorder prediction 345 366 - -
Lja5g3122 366 Pfam WRKY DNA -binding domain 292 348 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja5g3122 366 MobiDBLite consensus disorder prediction 351 366 - -
Lja5g3122 366 Gene3D WRKY domain 274 351 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja5g3122 366 Pfam Plant zinc cluster domain 243 288 IPR018872 -
Lja5g3122 366 ProSiteProfiles WRKY domain profile. 285 351 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja5g3122 366 MobiDBLite consensus disorder prediction 154 184 - -
Lja5g3122 366 SMART WRKY_cls 290 350 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja5g3122 366 MobiDBLite consensus disorder prediction 49 69 - -
Lja5g3122 366 SUPERFAMILY WRKY DNA-binding domain 286 350 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja5g3122 366 MobiDBLite consensus disorder prediction 118 137 - -
Lja5g3122 366 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 20 358 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3122 Lja-Chr5 60973013 60975144 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3122 27 311 WRKY Transcription Factor Family AT4G24240 45.918 1.16e-64 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja5g3122 WRKY 4.1e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3122 - - lja:Lj0g3v0162929.1 702.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3122 5 60973013 60975144 Lja5g3122 5 60973013 60975144 ECH