Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3120 ATGGAAACTGGATTACCTTTGCTGCAATGTCCCTTACACCATACTCTGAGAAGCATATGCTCATTACCAAATTCTTCAAGTTCTTCCAAGTGGGTGTACGCGGTATTCTGGAGGATAGTACCACGAAATTTTCCTCCACCAAGGTGGGAATTTGGAGGGAGTGCTCTTGATCTCTCAAAGGGGAATCATAGAAACTGGATCCTTGTGTGGGAAGATGGGTTTTGTGATTTTAATGAATGTGAGCAAAGGAGGAGTGAATATTTGAACAACAGCTTTGGAACTGATGTATTCTTCAAAATGTCTCATGAGGTTTACAGTTATGGAGAAGGACTAATGGGGAAAGTGGCTGCAGAAAATAGTCACAGATGGGTTTACAATGATACTCAAAATGGGTGTAAACCTAGCTACAATGGTTCATGGAATGCTTCAATTGATCATCAACCAAGGGCTTGGGATTTTCAGTTAAATTCTGGTATTCAGACTATTGCTGTCATTGCTGTTAAAGAAGGCTTAGTACAATTGGGTTCATTTAACAAGATTGCAGAAGATCTTGATTTAGTGCTCAGCTTACAAAGGAAGTTCATCTACCTCCAGAACATACCAGGTGTTTTGACCATTCAAAGACCATACAAAGCCATCCAACATCCATGCATTGCCAAATCCAATCTCCAAATGATGGAAACCAATGAAATGGCTCAATCAACCTACAATGACAATAACCAAGTAACTCATGTCAATGGATTGCTGCATAAAGAAAGACCAAGTTTCTTTTCCATGATTGCCATCAATTTGGGTAGAAACCACCCTCAAAATGGAACAACAGGACCACCCCTTTCAGTTCCTTCTTCCTTGCCCAACATGTCTTGCAGTTTTGGAGATCTTCTGTCAAAGCTTCCCTCTGTTACTCCACCCCATTATCACCCTCAAGTTCCTAAAACCAATTGGATCAACAGCTCAGGCCAGAAAGTGAAGATTGAGGATTGCAGTTTACAGCTTGCTGGTGATGGAGATCAAAAGGGAAATGCAGGGAGATCAATTTAA 1041 0.4092 METGLPLLQCPLHHTLRSICSLPNSSSSSKWVYAVFWRIVPRNFPPPRWEFGGSALDLSKGNHRNWILVWEDGFCDFNECEQRRSEYLNNSFGTDVFFKMSHEVYSYGEGLMGKVAAENSHRWVYNDTQNGCKPSYNGSWNASIDHQPRAWDFQLNSGIQTIAVIAVKEGLVQLGSFNKIAEDLDLVLSLQRKFIYLQNIPGVLTIQRPYKAIQHPCIAKSNLQMMETNEMAQSTYNDNNQVTHVNGLLHKERPSFFSMIAINLGRNHPQNGTTGPPLSVPSSLPNMSCSFGDLLSKLPSVTPPHYHPQVPKTNWINSSGQKVKIEDCSLQLAGDGDQKGNAGRSI* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3120 346 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 12 194 IPR025610 -
Lja5g3120 346 PANTHER TRANSCRIPTION FACTOR MYC/MYB-RELATED 1 321 - -
Lja5g3120 346 PANTHER TRANSCRIPTION FACTOR MYC/MYB-RELATED 1 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3120 Lja-Chr5 60946096 60947911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3120 29 199 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 30.460 9.35e-17 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3120 - - gmx:100807289 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3120 5 60946096 60947911 Lja5g3120 5 60946096 60947911 ECH