Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3110 ATGGAAACTTTAAATGACAATGTAGTCAACAACCCAACGAGGGAATCTCAAGAATCTGAAGTGACGGTAGAAAAATCACAAATGCTACGGGTTGCTAATGCTGCAATGCAGGAATTACTTTTTCTCTTGAATACGAGTGAACCCTTGTGGGTCAAGTCATCTAATGATGTGGTGGGTTTTGTTCTCGTCAGAGAAATATATGCAAAAAAGTTTCCAAGGATTACTAACTCGGAAAATCTCTACGTTTGTGAAGAATCTTCAAAAGATTCTCTATTAGTGATGGCGAGTGGGATGGAACTCGTTAAGGTCTTTTTAGATTCGGATAAATGGGCTGATATTTTACCAACAATTGTTTCAAAAGCCAAAACTATCCAAGTATTTGATGTCGGTTCAATAGAAAATCATAGTGGAGCATTACGATTGATGTGGAATGAAGTGCATGTTCTTTCTCCTCTAGTGCCATCTCGTGAATACTTCTTCCTACGTTATTGTCAACAAGTTGAGGCTGGTGAATGGCTAATAGTTGATGTTTCACTTGATTCATTTGGAAACTGTGCTTCTCGTTCTGTCGCTAAGAAGTTTCCCTCTGGCTGCCGAATTCGTGAATTGCCTAATGGGTGTTGCATGGTTACTTGGGTTGAACAAGTGGAAGTGGGTCAGAGTTTCCAACTAGACATGCTAGTGAGAGACATTGTTCGTAACAATATTGCATATGGTGCAAAAAGGTGGCTTTTGGAACTGCAAAGAACTTTTGAGAAAAAAGCTTGCTCTGAATTTTCATATACGGCTAGTACTGAAGGACTTGAAGGAGAGGTGAAGTTATTGGATGGAAGAAAGAGTGTGATAAACCTATCTAATCGAATGGTTGGAAGCTTTTTTAAAGTTTTGAACACTCAAGGCATACAAAATTTGTTAGATCCCTCTAACCAATTGACAACAAGCATTAAGCTCATTGCTCACAGAAACACAATACTAGATGGCATAGTTGTTATTGCTGTTTCCTCCATTTGGCTTCCTGTTACTCCTAAAAATCTTTTCCTCTTCCTTAAGGATGAATTCAGAAAAGCTGAGTGGGATTTTCTTGCTGGTGGAAGACCAATGCGCCAGAAGGCACATATATCAATTAATGAATCTAATCATGTTTCAATACTTCAGACTAGCAGCATTATTGGGGAGCACATGGTGATTTTTCAGGAAAGTAGCATAGATGATCTAGGAGGGTATGTTGTATATGCTCCAATAGACAAGTTAGATGCGTATATGATAGTGAATGGATGTGACTCTTCCAAGAAATTGATTCTACCCTCAGGCTTTACGATCTCAAGAGACGGTCGTGAAGGTAATGAAGGCTCGCTATTAACAATGTGTTTCCAAGTACTGGTTGATGAGGAAGGATCAAGCAGTCAAGTGAGAAAGAAAACTCTTGAGTCTATCGATTCAAGTTGCATGTTAATGTTACAACGTATTAAGGATGCTTTGCATTGTTCCGATTATTAA 1497 0.3874 METLNDNVVNNPTRESQESEVTVEKSQMLRVANAAMQELLFLLNTSEPLWVKSSNDVVGFVLVREIYAKKFPRITNSENLYVCEESSKDSLLVMASGMELVKVFLDSDKWADILPTIVSKAKTIQVFDVGSIENHSGALRLMWNEVHVLSPLVPSREYFFLRYCQQVEAGEWLIVDVSLDSFGNCASRSVAKKFPSGCRIRELPNGCCMVTWVEQVEVGQSFQLDMLVRDIVRNNIAYGAKRWLLELQRTFEKKACSEFSYTASTEGLEGEVKLLDGRKSVINLSNRMVGSFFKVLNTQGIQNLLDPSNQLTTSIKLIAHRNTILDGIVVIAVSSIWLPVTPKNLFLFLKDEFRKAEWDFLAGGRPMRQKAHISINESNHVSILQTSSIIGEHMVIFQESSIDDLGGYVVYAPIDKLDAYMIVNGCDSSKKLILPSGFTISRDGREGNEGSLLTMCFQVLVDEEGSSSQVRKKTLESIDSSCMLMLQRIKDALHCSDY* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3110 498 SUPERFAMILY Bet v1-like 24 254 - -
Lja5g3110 498 SMART START_1 30 253 IPR002913 GO:0008289
Lja5g3110 498 SUPERFAMILY Bet v1-like 327 462 - -
Lja5g3110 498 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 19 495 - -
Lja5g3110 498 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 19 495 IPR042160 -
Lja5g3110 498 MobiDBLite consensus disorder prediction 1 21 - -
Lja5g3110 498 CDD START_ArGLABRA2_like 25 249 - -
Lja5g3110 498 ProSiteProfiles START domain profile. 21 256 IPR002913 GO:0008289
Lja5g3110 498 Pfam START domain 31 250 IPR002913 GO:0008289
Lja5g3110 498 Gene3D - 29 258 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3110 Lja-Chr5 60797257 60799916 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3110 24 495 Homeobox Transcription Factor Family AT3G61150 36.220 8.43e-91 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3110 K09338 - aprc:113852280 420.239