Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3088 ATGGGAACCGAGAGCTACACTTACATGGGTCGCAGCTTCAGCGCGCTATCCATCAACGACGATTCATCTTCCTCCGCTTTCAGCGACTGCAACAGCGACAGATCTGGCGAATTCGCCACCGCTTCTTCCCAACCCGCCGCCCTTGTCGACGATCTCCAATCCTCCTCCGTCGACGATCAGAAACAAGCCGCCATGGAAATCCGATTACTCGCTAAGAACAAGCCTGAGAATCGCATCAAAATCGCCAAAGCCGGCGCAATCAAACCGCTAATTTCGCTTATTTCCTCGCAAGACCTCCAGCTTCAGGAATACGGCGTCACCGCGATTCTCAACCTCTCCCTCTGCGACGAGAACAAGGAGTTGATAGCTTCCTCCGGAGCGATTAAGCCTCTGGTGAGAGCGTTGAAAGCAGGGACGCCGACGGCGAAGGAGAACGCGGCGTGCGCGTTGCTCCGCCTCTCACAGGCGGAGGAGAGCAAGGCGGCGATTGGGAGGTCCGGCGCCATTCCGCTACTGGTGAGCCTCCTGCAAACCGGCGGTATCCGCGGGAAGAAGGACGCGTCGACGGCGCTGTACTCGCTCTGCTCGGCGGGGATCATGAAGGTTCTGGTGGAGCTGATGGCGGACTTTGAGTCAAACATGGTGGATAAGTCAGCGTACGTGGTGAGCGTGCTGGTGTCGGTGGCGGAGGCGAAGGCGGCGCTGGTGGAGGAAGGCGGCGTTCCGGTGGTGGTGGAGATCGTGGAGGTTGGGTCTCAGAGACAGAAGGAGATAGCGGTGGTTATTCTGTTACAGCTATGCGAGGAAAACGTGACCTATCGAACCATGGTGGCTCGCGAAGGTGCGATTCCTCCTTTGGTGGCTCTGACTCAGAACGGCACCAATCGCGCCAAGCAAAAGGCGGAGAAACTGATTGAGCTGCTGCGGCAACCGAGATCTGGGAGCGCCGCTGCACGTACGGCGGCGGAAGTGGTGGCATGA 981 0.5861 MGTESYTYMGRSFSALSINDDSSSSAFSDCNSDRSGEFATASSQPAALVDDLQSSSVDDQKQAAMEIRLLAKNKPENRIKIAKAGAIKPLISLISSQDLQLQEYGVTAILNLSLCDENKELIASSGAIKPLVRALKAGTPTAKENAACALLRLSQAEESKAAIGRSGAIPLLVSLLQTGGIRGKKDASTALYSLCSAGIMKVLVELMADFESNMVDKSAYVVSVLVSVAEAKAALVEEGGVPVVVEIVEVGSQRQKEIAVVILLQLCEENVTYRTMVAREGAIPPLVALTQNGTNRAKQKAEKLIELLRQPRSGSAAARTAAEVVA* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3088 326 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 85 127 IPR000225 GO:0005515
Lja5g3088 326 SMART arm_5 156 196 IPR000225 GO:0005515
Lja5g3088 326 SMART arm_5 270 310 IPR000225 GO:0005515
Lja5g3088 326 SMART arm_5 74 114 IPR000225 GO:0005515
Lja5g3088 326 SMART arm_5 227 268 IPR000225 GO:0005515
Lja5g3088 326 SMART arm_5 115 155 IPR000225 GO:0005515
Lja5g3088 326 PANTHER U BOX DOMAIN-CONTAINING 5 318 - -
Lja5g3088 326 Pfam Armadillo/beta-catenin-like repeat 158 196 IPR000225 GO:0005515
Lja5g3088 326 Pfam Armadillo/beta-catenin-like repeat 116 154 IPR000225 GO:0005515
Lja5g3088 326 Pfam Armadillo/beta-catenin-like repeat 75 113 IPR000225 GO:0005515
Lja5g3088 326 Gene3D - 29 181 IPR011989 -
Lja5g3088 326 Gene3D - 182 317 IPR011989 -
Lja5g3088 326 SUPERFAMILY ARM repeat 47 306 IPR016024 -
Lja5g3088 326 MobiDBLite consensus disorder prediction 18 38 - -
Lja5g3088 326 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE ISOFORM X1 5 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3088 Lja-Chr5 60529912 60531202 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3088 43 317 U-box Gene Family AT2G23140 47.368 1.47e-75 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3088 - - gmx:100797550 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3088 5 60529912 60531202 Lja5g3088 5 60529912 60531202 ECH