Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3068 ATGGAAGAAAATATGGAAGTGAGTGGAAGTGGAGGTCGAAAGGAGAAGAGGAAGGAAATGAAGAGATTGAAGCGGAAGCAGAAAAGGAAGGAGATGGCGGAGAAGGAGCGGATGGAGGAAGAGGCACGCCTTAACGATCCTGAGGAGCTGATGAGGCTGCAGTTGATAGAGCAGCAAGAAGCCGAGAGGATGGAAAAGGACAGGATTGCCTTTGACCAGAGAGAGAAGGCTTTCATTGAGACCATCAATCTCAACAAACAGCTTCAACTTCAACTTCAACAACAATCCCCCAAATCCAACCACAACACTGGTGTTGATGTTGATGTTGATGATGAGTACGTGGAGATGGAGGAAGAGGGGCCACCAGAGATTATTTGGCAAGGGAATGAGATCATATTCAAGAAGAAAAAGGTCAGAGTTAGGGTTTCGGACAAGGAAGCCAATCCAATTCATAGCCAGGAGCAGGGTGTCGTCGGTGATGATAGACCTACATCAAATCCCTTTCCCCCGGAATCTCAATCTCACACCAATTCAGCGGCGCTGCTCGACAATGTTGCTCGACAAGTACCGAATTTCGGAACAGAACAGGATAAAGACCATTGTCCTTTTCATCTAAAAACTGGAGCATGTCGTTTCGGTCAACGTTGTAGCAGAGTCCATTTTTACCCTGACAAGTCCTGCACCATCCTGATCAAAAACATGTATAATGGTCCTGGCCTCGCATGGGAGCAGGATGAGGGCCTTGAGTATACAGATGAGGAGGTTGAAAGCTGTTTTGAAGAATTTTATGAGGATGTTCACACAGAATTCCTGAAGTTTGGAGAAATTGTGAACTTCAAGGTGTGTAAAAATGGTTCATTTCACTTGCGAGGAAATGTCTATGTACAGTATAAATTATTGGATTCTGCTCTACTTGCTTATAATTCGGTTAATGGTCGATACTTTGCTGGGAAACAGGTAAGTTGTGAATTTATTAATTTGACAAGATGGAAGGTTGCCATATGTGGCGAGTATATGAAATCAGGTTTCAAGACTTGTTCCCATGGAACAGCATGCAACTTTATCCACTGCTTCCGCAATCCTGGTGGAGACTATGAATGGGCTGATTCTGACAAACCACCCCCAAAATTTTGGGTGAGAAAAATGGCTGCTTTATTTGGTTATTCTGATGACTATGAGATCTTAAGGGAGCAAGGGAATCTAAGTGTGCAGAGCTACAGGAACATGTCAAAAACAGATTCTGACAGGCATCACTCAAGAAGATCACAATCTGGGGAGATGGATCAATTAAATAGTGGTTATTCTGATAGAAGAAAACACGAAGATGAAAGAAATCAAAGAACTCCCAATGAGGGAAAGAAACGCAGAGACAGAACTCCTGATACTGATTCTGATAAGGAATGGTTAGAAGAAGAGGAAGATAGAGTAAAGCACCACAGATACACTAGGAAAAGCTCAATCAATAAGAATAATAAGAGAAGCCATGAAGAGGATTCTGATGTGGACTGGACTACTAAAACTAGGGGAAATAAAAAGCAGCATGACAGAGAAGGAAGAAACTCACAAAAGTCGAACTGGGACACTAGGAACTGGAATTGTGAGACTGGATCAGATGGGGATAGAGATAGAAAAAGACACCATATTAACCAAGAAGATCAAGATATTATGCATCACTCAAGAAGATCAAGATCTATAAAGATGGACCAGTTAAATAGTGGTTGTTCTCATAGAAGAAAACAGGAACGTGAAAGGAAGGAGAGGACTCCTGATGAGGAAAGGAGTACCAACATTAAGGACAATCTTAAAAAGAAGTGCAGAGGCAGAACTCCTGATACTGATTCTGATAAGGAATGGTCAGATGAAGAGCAGACTAGGAAAAACTCGCATAATAGGAACCATAGCAGTAACCACGAAGAGGATTCTGATGTGGATTGCGGTACTATAACTAGGGACAATGAAAAGCAGCCTTACAGCAAAGGAAGAAACTCACATTGTGGGAACTGGATTTATGAGACTGGATCAGACAGAGGTAGAGATAGGAAAAAACATCATATTGACCGAAGGTCAAGCTCAAGATATCAGAGCAGGGATAGCAGTCATGTAACCGCTGAATCTGAATCTGAATCTGACAACGATAGAGGAGAGATGGAATCACAACATGATTACTCTAGGAAAAGCTTGAGACACATGAGATATGACCTTCAGAATTACTGTGAAGACTATGAGAATGAAAATGACAAAATTGATGGAGGTTGGTCTCAGAGGGAGAGTGAACGAGCAGCACATCATCACAAAAAGAAGAGAGCTTGTTAA 2313 0.4207 MEENMEVSGSGGRKEKRKEMKRLKRKQKRKEMAEKERMEEEARLNDPEELMRLQLIEQQEAERMEKDRIAFDQREKAFIETINLNKQLQLQLQQQSPKSNHNTGVDVDVDDEYVEMEEEGPPEIIWQGNEIIFKKKKVRVRVSDKEANPIHSQEQGVVGDDRPTSNPFPPESQSHTNSAALLDNVARQVPNFGTEQDKDHCPFHLKTGACRFGQRCSRVHFYPDKSCTILIKNMYNGPGLAWEQDEGLEYTDEEVESCFEEFYEDVHTEFLKFGEIVNFKVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCEFINLTRWKVAICGEYMKSGFKTCSHGTACNFIHCFRNPGGDYEWADSDKPPPKFWVRKMAALFGYSDDYEILREQGNLSVQSYRNMSKTDSDRHHSRRSQSGEMDQLNSGYSDRRKHEDERNQRTPNEGKKRRDRTPDTDSDKEWLEEEEDRVKHHRYTRKSSINKNNKRSHEEDSDVDWTTKTRGNKKQHDREGRNSQKSNWDTRNWNCETGSDGDRDRKRHHINQEDQDIMHHSRRSRSIKMDQLNSGCSHRRKQERERKERTPDEERSTNIKDNLKKKCRGRTPDTDSDKEWSDEEQTRKNSHNRNHSSNHEEDSDVDCGTITRDNEKQPYSKGRNSHCGNWIYETGSDRGRDRKKHHIDRRSSSRYQSRDSSHVTAESESESDNDRGEMESQHDYSRKSLRHMRYDLQNYCEDYENENDKIDGGWSQRESERAAHHHKKKRAC* 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3068 770 MobiDBLite consensus disorder prediction 144 177 - -
Lja5g3068 770 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 13 549 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lja5g3068 770 Gene3D - 226 325 IPR012677 -
Lja5g3068 770 MobiDBLite consensus disorder prediction 534 565 - -
Lja5g3068 770 MobiDBLite consensus disorder prediction 690 727 - -
Lja5g3068 770 MobiDBLite consensus disorder prediction 410 424 - -
Lja5g3068 770 ProSiteProfiles Zinc finger C3H1-type profile. 329 359 IPR000571 GO:0046872
Lja5g3068 770 MobiDBLite consensus disorder prediction 432 480 - -
Lja5g3068 770 PRINTS U2 auxiliary factor small subunit signature 284 306 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lja5g3068 770 PRINTS U2 auxiliary factor small subunit signature 201 220 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lja5g3068 770 PRINTS U2 auxiliary factor small subunit signature 220 240 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lja5g3068 770 PRINTS U2 auxiliary factor small subunit signature 311 335 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lja5g3068 770 PRINTS U2 auxiliary factor small subunit signature 256 271 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lja5g3068 770 PRINTS U2 auxiliary factor small subunit signature 349 361 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lja5g3068 770 SUPERFAMILY RNA-binding domain, RBD 259 327 IPR035979 GO:0003676
Lja5g3068 770 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 227 327 IPR000504 GO:0003723
Lja5g3068 770 SMART c3hfinal6 196 222 IPR000571 GO:0046872
Lja5g3068 770 SMART c3hfinal6 329 358 IPR000571 GO:0046872
Lja5g3068 770 PANTHER ZINC FINGER CCCH-TYPE, RNA BINDING MOTIF AND SERINE/ARGININE RICH 2 13 549 - -
Lja5g3068 770 MobiDBLite consensus disorder prediction 743 770 - -
Lja5g3068 770 MobiDBLite consensus disorder prediction 572 658 - -
Lja5g3068 770 Coils Coil 13 45 - -
Lja5g3068 770 SMART rrm2_1 257 323 IPR003954 GO:0003676
Lja5g3068 770 MobiDBLite consensus disorder prediction 1 16 - -
Lja5g3068 770 MobiDBLite consensus disorder prediction 743 759 - -
Lja5g3068 770 ProSiteProfiles Zinc finger C3H1-type profile. 195 223 IPR000571 GO:0046872
Lja5g3068 770 MobiDBLite consensus disorder prediction 1 45 - -
Lja5g3068 770 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 330 357 IPR000571 GO:0046872
Lja5g3068 770 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 201 220 IPR000571 GO:0046872
Lja5g3068 770 MobiDBLite consensus disorder prediction 405 727 - -
Lja5g3068 770 MobiDBLite consensus disorder prediction 489 523 - -
Lja5g3068 770 MobiDBLite consensus disorder prediction 29 45 - -
Lja5g3068 770 CDD RRM_U2AFBPL 228 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3068 Lja-Chr5 60157917 60173097 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja5g3068 zf-CCCH 1.9e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3068 K24273 - cam:101495256 783.097