Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3065 ATGTATTTTCATCAAACAGTTGGTGGGCATGCAACTATGCCTCTGTATCAGGCATCAAAGGATAGAAAAGATGAGGGTTTGAAGATTGTTGATGTTCTGGGTCTTGAATCCACCATGAAAGGGGTTGAGATTTTGGATCTGAAGGTGATGATTGAGGAGATGGAATCAATTGATGTTCCATCTGTTTTCATCTGTCCAATCTCTCTTGAGCCAATGCAGGACCCTGTGACCCTTTGCACTGGCCAAACCTATGACAGATCCAACATCCTCAAATGGTTCTCACTTGGTCACAAAACTTGTCCCACAACAATGCAAGAGCTTTGGGATGATTCTGTCACACCCAACAAGACACTCACCCACTTGATCCTCACATGGTTCTCTCACAAGTACTTGGCCATGAAGAAGAAGCTTGAGGATGTTCAGGGAAGAGTCTTGGACCTCTTGGATATGCTCAAGAAGGTGAAGGGTCAAGCCAGGGTTAAAGCTCTTAAGGATCTGAGGCAACTTGTTGCAGCTAATGTGTTTGCTAGAAGGACTGTGTCAGAAAATGGTGGGCTTGCTTTGGTTTGTTCTTTGTTAGGTCCTTTCACTTCACATGCTGTAGGCTCTGAAGCAATTGGGATCATTGTGAATTTGGATTTGGTATCTGAGCTGAAGAGGAATTTGATGCATCCTGCAAAGGTTTCATTATTGGTGGATATCATGAATGAGGGAACCATTGAGACAAAGATGAACTGTGCTAAATTGATTGAGATGTTGTTGATTGAAGGGAGTGGGAATGGGAATGAAACAGAGATTGTCTCAAGCTTGAGTCTTTTGGTTGGGTTGTTGAGGTTAGTGAGGGATAAGAAACACCCAACTGGGGTCTTAACTGGTCTCATTTTACTCAAAGCTATATGTTCTTCCCATGAATCTGTTAGAAGCTCTGTGATAAGCATAGGGGCAGTTCCTCAATTGATTGAGCTTTTGCCTAGTTTGAACAAGGAGTGCTTAGAGGTAGCACTTTATATTCTAGAGGTTTTGTCAACTCTTCCAGAGGGAAGAATGGCCTTGAAAGAGTGTCCAAACATCATTCCTAATGTGGTGAAGTTGCTGATGAGAGTCTCAGAGAGGTGCACTCAATTTGCATTGTCAATATTGTGGGCTATCTACAAGCTTGCACCTGAAGAATGTGCCTCAAAGGCAGTGGAAGCTGGGTTAGCAGCTAAGTTGTTGTTAGTAATTCAGAGTGGTTGCAACCCAGTTTTGAAGCAAATGTCTTCTGAGTTCTTGAAAATGTGCAGTGTGAATTACTCTACTAGTATTTTGATTTCCAAGTGTATGCTCAGCACAATACAATGA 1341 0.4243 MYFHQTVGGHATMPLYQASKDRKDEGLKIVDVLGLESTMKGVEILDLKVMIEEMESIDVPSVFICPISLEPMQDPVTLCTGQTYDRSNILKWFSLGHKTCPTTMQELWDDSVTPNKTLTHLILTWFSHKYLAMKKKLEDVQGRVLDLLDMLKKVKGQARVKALKDLRQLVAANVFARRTVSENGGLALVCSLLGPFTSHAVGSEAIGIIVNLDLVSELKRNLMHPAKVSLLVDIMNEGTIETKMNCAKLIEMLLIEGSGNGNETEIVSSLSLLVGLLRLVRDKKHPTGVLTGLILLKAICSSHESVRSSVISIGAVPQLIELLPSLNKECLEVALYILEVLSTLPEGRMALKECPNIIPNVVKLLMRVSERCTQFALSILWAIYKLAPEECASKAVEAGLAAKLLLVIQSGCNPVLKQMSSEFLKMCSVNYSTSILISKCMLSTIQ* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3065 446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 140 IPR013083 -
Lja5g3065 446 PANTHER WDSAM1 PROTEIN 35 444 IPR045185 GO:0061630
Lja5g3065 446 SUPERFAMILY ARM repeat 144 429 IPR016024 -
Lja5g3065 446 Gene3D - 269 443 IPR011989 -
Lja5g3065 446 CDD RING-Ubox_PUB 63 105 IPR045210 -
Lja5g3065 446 SUPERFAMILY RING/U-box 53 127 - -
Lja5g3065 446 ProSiteProfiles U-box domain profile. 58 132 IPR003613 GO:0004842|GO:0016567
Lja5g3065 446 Pfam U-box domain 59 129 IPR003613 GO:0004842|GO:0016567
Lja5g3065 446 Gene3D - 141 268 IPR011989 -
Lja5g3065 446 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 35 444 - -
Lja5g3065 446 SMART Ubox_2 62 125 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3065 Lja-Chr5 60108429 60110001 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3065 43 446 U-box Gene Family AT3G49810 64.691 0.0 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3065 - - gmx:100803878 667.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3065 5 60108429 60110001 Lja5g3065 5 60108429 60110001 ECH