Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3048 ATGGTTGACAACAGTTGTGTACCCTGTATCTCCCCAACCTCCGAGAATGGCTCCTCGAAGCCCATTGGTCGCCCCTCCGCCTTAGGTGGTTCGACCAAAGGAGGAGGAGACAACATGATGATTGGCCTACCACAAAACACCAGCACAAACAACAAACAAATCCCTACTCCACCCTCCCATCCACAACCACCACCCACATATGAGCACCCTACCTTCCCAAAGGAGGAACTAGACACTTCACCACTCTCCATGGGGCCAAGGGGAAGGCCCCGTGGCTCTAAGAACAAGCCCAAATCACCAATCATTGACAACACCCTCAATTCCATCGTAATTGAAATCCCTCCTGACAATGATGTCATTCAATTTCTCATCGACTTTGCTTGCTCCCATCAAGTTAACCTCATTGTTACAAGTGGTTCTGGTATTGTGTCAGGTATTCATATTCGCCATCCTGATCCTCTCTATGGCTCTACTTTGATCTACCCCGGACTCTACAGAATGATTTCTCTGAGTGGAACCTACATGAATTTTCACTTCCCTCACTCTTTTTCCATTGCTAATAACCTTCCTTGTGTGAAAAACTTCACGATTCGCGTATTTGGGAGTCAGGGTGTCGTTTATAATGGGATTGTTGCAGGGAAGGTCATGGCTGCGAGTAATGTAGTGGTCAACGCCTTAATATCCAAGAACTTTGAATATCACAAGGCTCGTTCCATCGATGGAAACATACTGATTGAGGAAGACGAAGAGCATTCCTCTTCTTTCAGTGATCAGCATTCAAGTGATTCCAATATCATAGTGGTCAACACCAACAATGCGTAG 822 0.4611 MVDNSCVPCISPTSENGSSKPIGRPSALGGSTKGGGDNMMIGLPQNTSTNNKQIPTPPSHPQPPPTYEHPTFPKEELDTSPLSMGPRGRPRGSKNKPKSPIIDNTLNSIVIEIPPDNDVIQFLIDFACSHQVNLIVTSGSGIVSGIHIRHPDPLYGSTLIYPGLYRMISLSGTYMNFHFPHSFSIANNLPCVKNFTIRVFGSQGVVYNGIVAGKVMAASNVVVNALISKNFEYHKARSIDGNILIEEDEEHSSSFSDQHSSDSNIIVVNTNNA* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3048 273 ProSiteProfiles PPC domain profile profile. 103 247 IPR005175 -
Lja5g3048 273 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 51 249 - -
Lja5g3048 273 Pfam Plants and Prokaryotes Conserved (PCC) domain 108 225 IPR005175 -
Lja5g3048 273 MobiDBLite consensus disorder prediction 41 55 - -
Lja5g3048 273 Gene3D - 107 252 - -
Lja5g3048 273 SUPERFAMILY AF0104/ALDC/Ptd012-like 105 235 - -
Lja5g3048 273 MobiDBLite consensus disorder prediction 7 21 - -
Lja5g3048 273 MobiDBLite consensus disorder prediction 1 101 - -
Lja5g3048 273 CDD DUF296 107 223 IPR005175 -
Lja5g3048 273 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 51 249 IPR014476 GO:0003680
Lja5g3048 273 MobiDBLite consensus disorder prediction 56 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3048 Lja-Chr5 59770374 59771195 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3048 86 261 AT-hook Motif Nuclear Localized (AHL) Family AT1G14490 36.464 2.47e-25 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3048 - - lang:109328424 135.576