Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3041 ATGAAGACACAAAAAGGCAACATGGGCAGGGCTCCTTGCTGTGACAAAGCGAACGTGAAGAAAGGTCCATGGTCGCCAGAAGAAGATGCCAAGCTCAAGTCCTACATAGATGACCATGGCACCGGGGGCAACTGGATTGCTTTGCCACAAAAGATTGGACTGAAGCGTTGTGGCAAGAGTTGCCGTCTCAGGTGGCTAAACTATCTACGCCCTAATCTCAAGCATGGTGGTTTCTCCGAGGAAGAAGACAACATCATTTGTAGCCTTTACATTAGTATTGGAAGCAGGTGGTCGGTGATTGCAGCTCAACTGCCCGGAAGAACTAATAATGACATAAAGAACTACTGGAACACAAGGCTCAAAAAGAAGCTTTTTGGGAAGCACCGTAACAAAGAAGCACGAAATAGAGGCAACGGTGGTGTTAAGCAAGAAAGCAATAATAGAGAGAGTGTTGAATATCCCTTATCCTTGGTTCATGAAAATAGTACTACTCATCAACAACCATATTTGCCACACATCCCTGTGCTATCACCACCGCCACCTTTGCAATACACAAACCAAGGCGCTAGTTTCAAGGACCAAGATTCTATTAGAAAATTGCTCATCAAACTTGGAGGGAGATTTTCCAATGAGTATCATCATCCTACCTTTGATGGGTCACAACAAGATTTTCAAGAAAAAGTTCATGTGGGCTCTTCTTCTTGCATTAACAACAATGAAGTAGTACAATTTGGTCAGTACTCTCCACAGGTTGGTGTTGGAGTACTTGACATGGTGCAAAGAGAAGGGAGTTTCCCACCAACAATCGAAGCAATGGTATCTACTAATTCTCCACAAAGATTGGATGGGTTGGAGTTTTTCTATGGGGAGGAGATAATAGATGATAAGATAATAGGGACCAGTACTAGTTGTAGCCAAAGTACTAGCTGGGGTCTTGAAACTTGCAATCCTATGTATCATTCACTTCCTTTGAATTTCCAAGGTTAA 987 0.4296 MKTQKGNMGRAPCCDKANVKKGPWSPEEDAKLKSYIDDHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNLKHGGFSEEEDNIICSLYISIGSRWSVIAAQLPGRTNNDIKNYWNTRLKKKLFGKHRNKEARNRGNGGVKQESNNRESVEYPLSLVHENSTTHQQPYLPHIPVLSPPPPLQYTNQGASFKDQDSIRKLLIKLGGRFSNEYHHPTFDGSQQDFQEKVHVGSSSCINNNEVVQFGQYSPQVGVGVLDMVQREGSFPPTIEAMVSTNSPQRLDGLEFFYGEEIIDDKIIGTSTSCSQSTSWGLETCNPMYHSLPLNFQG* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3041 328 MobiDBLite consensus disorder prediction 129 148 - -
Lja5g3041 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 73 IPR017930 -
Lja5g3041 328 SMART sant 20 71 IPR001005 -
Lja5g3041 328 SMART sant 74 122 IPR001005 -
Lja5g3041 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 124 IPR017930 -
Lja5g3041 328 CDD SANT 78 120 IPR001005 -
Lja5g3041 328 Gene3D - 14 75 - -
Lja5g3041 328 PANTHER TRANSCRIPTION FACTOR MYB36-LIKE 8 311 - -
Lja5g3041 328 ProSiteProfiles Myb-like domain profile. 16 69 IPR001005 -
Lja5g3041 328 Pfam Myb-like DNA-binding domain 76 118 IPR001005 -
Lja5g3041 328 Pfam Myb-like DNA-binding domain 21 69 IPR001005 -
Lja5g3041 328 CDD SANT 23 69 IPR001005 -
Lja5g3041 328 Gene3D - 77 152 - -
Lja5g3041 328 PANTHER OS09G0431300 PROTEIN 8 311 - -
Lja5g3041 328 SUPERFAMILY Homeodomain-like 18 116 IPR009057 -
Lja5g3041 328 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3041 Lja-Chr5 59488777 59490619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3041 8 203 MYB Transcription Factor Family AT3G49690 64.141 6.75e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja5g3041 Myb_DNA-binding 3.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3041 K09422 - gmx:100800290 395.586