Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3038 ATGGATTGTGCAGAGAAATCCCTTAAGGATGATCAAGTTACATGTGAAAGAATGGAAGAAATAAAGAAAGAAAGTCCCGAAGGTGAAGTGATGACTAACAATCCTAACAACATTAGGAGAAGGAAGATTTTTGTTGGAGGCTTACCTTCAAGTACATCTGAGGAAGAATTCAGGAAGTATTTTGAGAAGTTTGGCACAATAACAGATTTGGTGGTGATGCAAAACACCGTAACACGCCGACCTAGAGGATTTGGGTTCATCACTTTCGATTCAGAAAAATCTGTTGAACAAGTTCTGGAGAAAAGCTTTCATGAACTGAATGGTAAACAAGTGGAGGTTAAGAGGGTTGTGCCAAAAGAGGAGAACAATAAGAGTGGAAAAGGAGTATTTTCAAAAAGTTTTCCTTATTATGAACCCAAGTACATTATTGCCAACTATGGATATGCCCTTTCATATGATCATTATGGGAACATTTGGTATGTACCCATGATCCTAATGTCTAAGGTTCCTTCTACTTACATTTTACCAAGTTAA 534 0.3727 MDCAEKSLKDDQVTCERMEEIKKESPEGEVMTNNPNNIRRRKIFVGGLPSSTSEEEFRKYFEKFGTITDLVVMQNTVTRRPRGFGFITFDSEKSVEQVLEKSFHELNGKQVEVKRVVPKEENNKSGKGVFSKSFPYYEPKYIIANYGYALSYDHYGNIWYVPMILMSKVPSTYILPS* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3038 177 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 4 165 - -
Lja5g3038 177 SMART rrm1_1 42 114 IPR000504 GO:0003723
Lja5g3038 177 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 111 IPR000504 GO:0003723
Lja5g3038 177 SUPERFAMILY RNA-binding domain, RBD 33 131 IPR035979 GO:0003676
Lja5g3038 177 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 118 IPR000504 GO:0003723
Lja5g3038 177 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 4 165 - -
Lja5g3038 177 Gene3D - 38 129 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3038 Lja-Chr5 59434504 59435657 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3038 30 127 C2H2 Transcription Factor Family AT2G19380 26.531 3.07e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3038 K14411 - gmx:100816822 152.91