Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3027 ATGGTGAACATGTCTTTGGCATTGCTCGCATCTTTGCTTCCTTCAATGACACTTTCATTGGAAACCCTTGTCCGCATCACTGGTGGAATGAAGGTGAAAGCTGACAGAGATGAGTCATCTCCTTATGCAGCTATGCTTGCAGAGTTGGGCATTACTGCCCTTCATATCAAGGACTCATGA 180 0.4556 MVNMSLALLASLLPSMTLSLETLVRITGGMKVKADRDESSPYAAMLAELGITALHIKDS* 60
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3027 59 Pfam Ribosomal protein S11 21 47 IPR001971 GO:0003735|GO:0005840|GO:0006412
Lja5g3027 59 PANTHER BNAA05G27530D PROTEIN 21 57 - -
Lja5g3027 59 Gene3D Ribosomal protein S11 17 58 IPR036967 GO:0003735|GO:0005840|GO:0006412
Lja5g3027 59 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 21 57 IPR001971 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3027 Lja-Chr5 59228497 59234253 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3027 21 57 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 76.087 1.60e-17 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3027 K02955 K01000 mus:103996746 66.6254