Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3024 ATGGGTATCTGCATATCCCTTGCATCTTCAGAGATTCATGGGGTCCCTGAAGAAGTTCATGATGAGAATGTGACAATATTTGAATCAAACAAGGTCCTAAATGGGAATAAGAGACTTTGCTCTGTTTATTCTAAACAGGGAACAAAAGGACTAAACCAAGATGCTGCCTCACTTTACCAGGGTTACGGGATGGAAGATGGAGCATTTTGTGGCGTTTATGATGGACATGGAAGATATGGACACATAGTGAGCAAAATGGTAAACAGTCATTTGCCTTCACTCATTCTGAGCCAAGGGAATGCTCCTGTAGAGATTAATAAAATAGAAAATGGTGATGACAACACCCCAAGCAATTTTAACACAGTGGAAGATGACTTGGCTCCAAAGAACTTTCAGAAGTGGAAGAGAGCCATTGTTAGTGCTTTCATGGTGATGGACAAGCAGGTTAAGCTACAAGAGAATCTAGACTGCTCTTGCAGTGGAACTACTGCAGTAGTTGTCATTAGACAGGGTGAAGGTCTTATCATAGCTAATTTGGGTGACTCAAGAGCTGTCTTGGGAACAATCCATGATGAGAAACTCACAGCCATTCAATTGACCACTGATTTGAAACCTGGATTACCTAGTGAAGCAGAAAGAATAAGGAGGTGCAACGGTTGTGTGTATGCTCTTAAAGAAGAACCACATATCCAACGAGTGTGGTTGCCTAATGAGAACTTCCCTGGCCTAGCCATGTCTCGAGCTTTTGGAGATTTCATGCTCAAAGACCATGGTGTTATTGCCATCCCAGATATTTGGTATCACCATGTAACATCAAGGGACCAATTCATTGTTCTTGCAAGTGATGGGGTGTGGGATGTGCTAAGTAATAGTGAGGTTGCATCAATTGTGTGGATGGTAGACACTGAAGAGGAAGCAGCAAAGGCAGTTGTGGAAGCAGCCACTGCTGCATGGGAGAAGAAGTATCCTTCCTCTAAGGTAGATGACTGTACAGTGGTTTGCCTCTTCCTGCAGAAGAAACCACAATACTCTGGGCATATGAAAAGTGAAAAGTTAGGTTAA 1062 0.4275 MGICISLASSEIHGVPEEVHDENVTIFESNKVLNGNKRLCSVYSKQGTKGLNQDAASLYQGYGMEDGAFCGVYDGHGRYGHIVSKMVNSHLPSLILSQGNAPVEINKIENGDDNTPSNFNTVEDDLAPKNFQKWKRAIVSAFMVMDKQVKLQENLDCSCSGTTAVVVIRQGEGLIIANLGDSRAVLGTIHDEKLTAIQLTTDLKPGLPSEAERIRRCNGCVYALKEEPHIQRVWLPNENFPGLAMSRAFGDFMLKDHGVIAIPDIWYHHVTSRDQFIVLASDGVWDVLSNSEVASIVWMVDTEEEAAKAVVEAATAAWEKKYPSSKVDDCTVVCLFLQKKPQYSGHMKSEKLG* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3024 353 Gene3D - 21 340 IPR036457 -
Lja5g3024 353 SUPERFAMILY PP2C-like 27 338 IPR036457 -
Lja5g3024 353 Pfam Protein phosphatase 2C 64 316 IPR001932 -
Lja5g3024 353 PANTHER PROTEIN PHOSPHATASE 2C 72-RELATED 1 342 - -
Lja5g3024 353 CDD PP2Cc 38 298 IPR001932 -
Lja5g3024 353 ProSiteProfiles PPM-type phosphatase domain profile. 39 337 IPR001932 -
Lja5g3024 353 PANTHER ALPHABET, ISOFORM E-RELATED 1 342 - -
Lja5g3024 353 SMART PP2C_4 30 335 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3024 Lja-Chr5 59188676 59196060 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3024 1 344 PP2C-type Phosphatase Gene Family AT5G26010 53.276 4.10e-109 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3024 - - aip:107605550 511.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3024 5 59188676 59196060 Lja5g3024 5 59188676 59196060 ECH