Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3019 ATGGAGAATGCTATGTTTAGTGATCCATTGGACATGGCTGACCAAAATTCTACTTGCATTGAAGATAATATCACACAGCACCTCATCCCAAAGCCACTCATCTATTGCTGTTCATTTGACCTCAATAGCCAAAGCCACATCATAAATGGGATTCCAATACTTTCTGGAGAGCAAACTGAACATATAAGTAATGCCCAATTAGATGGTAGCTTCATAAATCCAGTTACTATTGCTAATTCCAATTCATTTGCTACATCACAAGGGATGACTTTTATGCTAGATGCCTCAAATCCCACTGGTAACAGTGACTTTGAGGATCATTTAGCTGGAGGAAGGCCAATTTCTTGTGCTTCAGTTCCTGCTAGAATTGGTCTTCAAGAAAACTTAGAAAATTCTGCATCTTTGGAGGTATCAGGACCATTTGTTTTCAATAATTGGCAAGATTCCTCAAACCCTTTGTCTGCAAATTTTTGTAGTAGTGGCTATGATGAAGCACCCAGTAATGGTAGATGGATTTTTAACAAGTTTCTGAAAGCTTCAGAGGCTGATCTTACTGGGTTACTGCCTTATTCATCCATAGGAAACATAGAACCGAATGGATGGTCATCATCAAATGTTGCAAACTTGGCTAATCATGCTTATAACTCGTCTAATTGTAGTAATGAGCTATCATTAAGCCTTGCTTCATCGTCTCCAACCACAGGTCAGTGCTCTGACTTGACTCATAGTATGAATGGAACATCATCAGGCAACAGTATGGAAGTTAGTATGAGTATGGATTCTAATGGAAGATTTCAGTTTTCACCGGCAATTCTTGGATCAAGATACCTTTCTGGAATTCAGGAGATACTTGTTCAGATTGCAACATATTCATTTGAAAATTTAGAAGAGGTAAATTATTCAGCTGCTGGTGTTAGAGGAGGTAATAAATCAACTTCAGCGTTCACACCCAAGAGAAGGATAGCAACAAATCACAATGCAGATTCTCCATTGCAAGGACAAGCTGCTGAATCAATCAAATCTCAACTGCTGATGCTTCTACAACTGGTGGACAATAGATATAGTCAGTGTTTGGATGAGGTACATACCGTTGTATCTGCATTCCATGCTGCTACTGAGCTGGACCCACACATACATGCACATTTTGCTCTTCAAACAATCTCTCTCCTATACAAGGACTTGAGAGAGAGGATTAGCACTCAAATTCTTGCCATGGGGTCCAATTTCAACATGTCATGCTCTGAAGAGGAGAAGGAATGGTCTATGGAAACTTCATTTGTTCAGAAGCAATGGGCTCTCCAACAGTTGAAAAGAAAAGATCAGTTATGGAGGCCCCAAAGGGGCTTGCCAGAAAGATCTGTCTCAGTTCTACGTGCTTGGATGTTTCAGAATTTCCTTCATCCGTATCCCAAAGAAGCAGAGAAGCATTTGCTTGCTGTAAAAAGTGGGTTGACAAGGAGTCAGGTATCGAACTGGTTTATAAATGCCCGTGTTCGGCTATGGAAACCAATGATAGAGGAAATGTATGCTGAAATGAGTAGAAGGAAAGCTTGTCGAAATGAAGAAGGAAAGGAGACCAGTCATAAAAGCAGGATAAGCTTGAATAATCAAATGTTTAACATCAATTGA 1629 0.3984 MENAMFSDPLDMADQNSTCIEDNITQHLIPKPLIYCCSFDLNSQSHIINGIPILSGEQTEHISNAQLDGSFINPVTIANSNSFATSQGMTFMLDASNPTGNSDFEDHLAGGRPISCASVPARIGLQENLENSASLEVSGPFVFNNWQDSSNPLSANFCSSGYDEAPSNGRWIFNKFLKASEADLTGLLPYSSIGNIEPNGWSSSNVANLANHAYNSSNCSNELSLSLASSSPTTGQCSDLTHSMNGTSSGNSMEVSMSMDSNGRFQFSPAILGSRYLSGIQEILVQIATYSFENLEEVNYSAAGVRGGNKSTSAFTPKRRIATNHNADSPLQGQAAESIKSQLLMLLQLVDNRYSQCLDEVHTVVSAFHAATELDPHIHAHFALQTISLLYKDLRERISTQILAMGSNFNMSCSEEEKEWSMETSFVQKQWALQQLKRKDQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKEAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMSRRKACRNEEGKETSHKSRISLNNQMFNIN* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3019 542 PANTHER HOMEOBOX PROTEIN ATH1 13 539 - -
Lja5g3019 542 Pfam Associated with HOX 271 399 IPR006563 -
Lja5g3019 542 Pfam Homeobox KN domain 460 499 IPR008422 GO:0003677|GO:0006355
Lja5g3019 542 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 13 539 - -
Lja5g3019 542 CDD homeodomain 443 504 IPR001356 GO:0003677
Lja5g3019 542 ProSiteProfiles 'Homeobox' domain profile. 440 503 IPR001356 GO:0003677
Lja5g3019 542 SUPERFAMILY Homeodomain-like 445 512 IPR009057 -
Lja5g3019 542 SMART HOX_1 443 507 IPR001356 GO:0003677
Lja5g3019 542 Gene3D - 439 518 - -
Lja5g3019 542 SMART prehox3 265 400 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3019 Lja-Chr5 59151011 59154622 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3019 221 516 Homeobox Transcription Factor Family AT4G32980 54.487 2.87e-101 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lja5g3019 POX 1.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3019 - - gmx:100812648 741.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g3019 5 59151011 59154622 Lja5g3019 5 59151011 59154622 ECH
Lja5g3019 5 59151011 59154622 Lja1g4043 1 51232070 51234386 PCT