Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g3008 ATGCCCAAAATGAAGCATCTTCTCCGAAAGCTTCACATCGGTGGTGGCGCCGCAACTGCTACTACTACTCCTACTCCTACTCCTACCACCACCACCATCACCAACCACAACGCCGCCGCATTGCCTCACTCTCCCACCACCACTCCTTCACCTCCTCTTCCTTCTTCCTCCTCCTCCGCCCTCCCCTCTCCGGACGCCGCCGGCGACTTCAATTTGTTGCAGGAAGAAGAGTTTCAGATGCAGTTGGCCCTAGCAATCAGCGCTTCGTCTTCCGATCCTAATGTTAACGCAGAATCTGCTCAGATCGATGCTGCTAAACAGATCAGCCTTGGCTACTCAGCTTCTGTCACTGACACCCAAGCCCTCGTTCAGTTTCAATCTCTTCGTTACTGGAATTATAATGTCATTGATTATAATGAGAAAGTGATGGATGGGTTTTATGATGCGTATGGGATCACCTCGACTTTGATTGAACAAGGGAAGATGCCGTTGTTGGTGGATCTGCAAAGTACGTCTCTCTCGCGAAATCTTGAGTGTGAAGTAATTTTGGTGAATCGTTTTGTTGACAGTGAGCTGAATCAGCTTGAGATAAAAGCATGCACTTTGTTCAACGAGTGTTGTGTTTCTGAGCTAGGGCTAATTTTGAGTGGCATACTTCAGAAACTTGCTGATATTGTTGTTAATAGAATGGGAGGACCAGTTGGAAATGCTGATAAAATCACAAAAAGGTGGGCTATGAGGAGTCGTGAGTTACGAGACTCTTTAAGAACCAATGTCCTTCCCCTTGGATATCTCGATATTGGACTTTCGCGTCACCGAGCCCTACTTTTTAAGGTACTTGGAGATAGGATCAATATTCCCTGCATGCTGGTAAAAGGGAGCTACTACACAGGAACTGATGATGGAGCTGTCAATTTGATTAAAGATGATGACGGAAGTGAATACATCATTGATTTGATGGGGGCTCCTGGCACTCTTATTCCTGCTGAGATTCCCAGCAGTCAGCTCCAAAACTGTGGTTTTGCTGTTAGGGGTTGTGCAGAGATTGTAGGACTACCTAACAGTACAAATGTGATGCTTGATGCTGTAGCTGGTGTGCCTGTAGTCTTGTCTGATCATGGTAGAATGCCAACCGTGGGGAGGTTCCAGACAGAATTATTGGATATGGGTTACCAAACAAAACCAGATGAAGTAAATCATTCTAAAGTAAATGAAAAAGGGATATTTGAACATACAAAAGCATATGAATGTTCACATACAGAATCATCACATGCAGAAAACATGCATGTAAAAAATGTCTCCAATTATGTTCGCAGTGCAGCACAGAACCCAGAATTTGGCCCAGAACTGCACCGTATTCTATTTGAGAGTGGTGCATCCCCTCCGCCTGATCTTTTTTCAGATATAAATCCTCGAGATTGGGGTCGAGAGGCTGTTCAATCTGACCCAAATAGGCTGTTATTAAGCTATGAAAAGTCTCTCATAAACTCTCAAGGTGTAGGCTCTGCCAGAGATACTTGGTCATGTCAATCTGCTGACCGCTTAGCTGGAAAACAAAAACAATTGCATACAGATGCCATTGAATGTTCTGATTCTTCACAGGGTGATAATACGAGCAATGGGATTTTGACAGTTTCTGATAGAGATAATGGTTTGGAGCAGTCTAATCCATTAACTGTTGATTGCGATTCTATCAATACACGTCATACATGTAAAGAGAAGTGTGTTGAGTCTTCCTTGCCCAATGCAGTTCTTTCTTGCAAAAGGCACAATGGTGTTGACTGTTATCATGACGATGATGAAAACGGTCTTAGAAATAAGGTTGGAGCTTCTTTCAAAAACAGTGCGTTGGGGAAAGATTCAGCCATTCAAATAAATGAGATGGTCAATGGGGATTGTACCCTACATGATGATCAAAGCAAGAAAATTAGCTCAGTGCTTGGTGAAGGCACAGATTGGGAAATTCAATGGGAGGAGCTTCGTATTGGTGAGCGTATTGGTATTGGTTCTTATGGTGAAGTTTACCGGGCTGATTGCCATGGCACCGAAGTTGCTGTAAAGAAGTTTCTGGACCAAGATTTCTCTGGTGATGCACTAGCTCAGTTCAAATCTGAAATTGAGATCATGTTAAGGCTGCGGCATCCTAATGTAGTGCTCTTCATGGGAGCAATTACTCGTCCCCCGCATTTCTCTATCTTGACAGAATTTCTTCCAGGAGGCAGCTTATATAGGCTCTTGCATCGTCCCAATCTTGTACTTGATGAGAAGAGACGGTTGCGTATGGCTCTTGATGTGGCTAAGGGAATGAATTACTTGCACACCAGCCATCCTCCCATTGTTCATCGAGATTTAAAGTCTCCAAATCTTCTTGTTGACAAGCATTGGGTTGTAAAGGTCTGTGATTTTGGTCTGTCAAGTTTGAAGCACCATACATTTTTGTCATCCAAGTCTTGTGCTGGAACGCCTGAGTGGATGGCACCAGAAATCTTAAGAAATGAACCAGCCAATGAGAAGTGTGATGTGTATAGTTTTGGTGTGATCTTGTGGGAGTTGATTACCACAAAAATCCCGTGGAAAGGTTTGAACCCAATGCAGGTTGTTGGAGCTGTTGGATTCCAAAATAAACGGCTTGAAATTCCAGAAGATGTGGATCCAGTAGTAGCACAGATAATACGTGATTGCTGGCAGACGGAGCCACACTTGCGGCCATCATTCTCACAGCTGATGTCTCGTCTTTACCGTCTTGTACAACAGGGCGTCCGCAAAACGGGCTCGACACATTAA 2784 0.4407 MPKMKHLLRKLHIGGGAATATTTPTPTPTTTTITNHNAAALPHSPTTTPSPPLPSSSSSALPSPDAAGDFNLLQEEEFQMQLALAISASSSDPNVNAESAQIDAAKQISLGYSASVTDTQALVQFQSLRYWNYNVIDYNEKVMDGFYDAYGITSTLIEQGKMPLLVDLQSTSLSRNLECEVILVNRFVDSELNQLEIKACTLFNECCVSELGLILSGILQKLADIVVNRMGGPVGNADKITKRWAMRSRELRDSLRTNVLPLGYLDIGLSRHRALLFKVLGDRINIPCMLVKGSYYTGTDDGAVNLIKDDDGSEYIIDLMGAPGTLIPAEIPSSQLQNCGFAVRGCAEIVGLPNSTNVMLDAVAGVPVVLSDHGRMPTVGRFQTELLDMGYQTKPDEVNHSKVNEKGIFEHTKAYECSHTESSHAENMHVKNVSNYVRSAAQNPEFGPELHRILFESGASPPPDLFSDINPRDWGREAVQSDPNRLLLSYEKSLINSQGVGSARDTWSCQSADRLAGKQKQLHTDAIECSDSSQGDNTSNGILTVSDRDNGLEQSNPLTVDCDSINTRHTCKEKCVESSLPNAVLSCKRHNGVDCYHDDDENGLRNKVGASFKNSALGKDSAIQINEMVNGDCTLHDDQSKKISSVLGEGTDWEIQWEELRIGERIGIGSYGEVYRADCHGTEVAVKKFLDQDFSGDALAQFKSEIEIMLRLRHPNVVLFMGAITRPPHFSILTEFLPGGSLYRLLHRPNLVLDEKRRLRMALDVAKGMNYLHTSHPPIVHRDLKSPNLLVDKHWVVKVCDFGLSSLKHHTFLSSKSCAGTPEWMAPEILRNEPANEKCDVYSFGVILWELITTKIPWKGLNPMQVVGAVGFQNKRLEIPEDVDPVVAQIIRDCWQTEPHLRPSFSQLMSRLYRLVQQGVRKTGSTH* 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g3008 927 PRINTS Tyrosine kinase catalytic domain signature 883 905 IPR001245 GO:0004672|GO:0006468
Lja5g3008 927 PRINTS Tyrosine kinase catalytic domain signature 773 791 IPR001245 GO:0004672|GO:0006468
Lja5g3008 927 PRINTS Tyrosine kinase catalytic domain signature 734 747 IPR001245 GO:0004672|GO:0006468
Lja5g3008 927 PRINTS Tyrosine kinase catalytic domain signature 820 830 IPR001245 GO:0004672|GO:0006468
Lja5g3008 927 PRINTS Tyrosine kinase catalytic domain signature 839 861 IPR001245 GO:0004672|GO:0006468
Lja5g3008 927 Pfam Protein tyrosine and serine/threonine kinase 660 912 IPR001245 GO:0004672|GO:0006468
Lja5g3008 927 MobiDBLite consensus disorder prediction 13 67 - -
Lja5g3008 927 PANTHER SERINE-THREONINE PROTEIN KINASE 63 915 - -
Lja5g3008 927 MobiDBLite consensus disorder prediction 18 44 - -
Lja5g3008 927 ProSitePatterns Protein kinases ATP-binding region signature. 666 688 IPR017441 GO:0005524
Lja5g3008 927 MobiDBLite consensus disorder prediction 527 550 - -
Lja5g3008 927 CDD STKc_MAP3K-like 666 912 - -
Lja5g3008 927 ProSitePatterns Serine/Threonine protein kinases active-site signature. 779 791 IPR008271 GO:0004672|GO:0006468
Lja5g3008 927 ProSiteProfiles Protein kinase domain profile. 660 916 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g3008 927 SMART serkin_6 660 916 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g3008 927 Gene3D Transferase(Phosphotransferase) domain 1 739 925 - -
Lja5g3008 927 SUPERFAMILY Protein kinase-like (PK-like) 648 913 IPR011009 -
Lja5g3008 927 Pfam Ethylene-responsive protein kinase Le-CTR1 124 327 - -
Lja5g3008 927 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 63 915 - -
Lja5g3008 927 Gene3D Phosphorylase Kinase; domain 1 653 737 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g3008 Lja-Chr5 58968480 58987253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g3008 575 915 MAP Kinase Kinase Kinase AT5G11850 71.429 1.42e-170 517
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Lja5g3008 PK_Tyr_Ser-Thr 4e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g3008 K04424 - gmx:100779137 1328.15