Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2997 ATGACTCCTGTTTCTCTGAACCCACCAGGTCCTTCCATACAAGGTCAAAACCATCTCTTCAATTCTCTTAATAATCAGGATTATCATGCTTCCTTATTTAACATACTTGATCGGAGGCAAGGCATAGGAATTGGAGAGTTAAGAGAAAATGATCACCAGGACGATAAGCTGGTGGTATGGCATGATGGATCATCATCATCATCAAGCAGCAATCATCTTTACAATTCGACTTTTATTTCACCTCAGCCAGTTATGGACAACCCAAGCAGCAGCACATGTGACCCAAATTTATCATTCTCCAAAATGGAGGAGGAAGACATCAAAAACGTTCACGGGTCTGCAAAATGGATGTCTTCAAAGATGAGGTTGATGAAAAAAATGATGAGTACTCCAGCCACTGACAAAGCAAACAACTCTACTACTATTCCAATTAGTCCAAGAATCCAAAATCAAGGGCATGAAAACAGGTACAGCCAAAGAAGCCCTCGTAATAACAACAACAGCAGTAACACCACTAGGGTTTGTTCGGATTGTAACACAAGCAGTACCCCACTTTGGAGGAGTGGCCCTAACGGTCCTAAGTCGCTTTGCAATGCATGTGGAATTAGACAGAGGAAGGCAAGAAGGGCAATGGCAGAAGCTGCTAATGGTTTGGCCACTCCCATAAATACAGCATCAACAAAGACCAGAGTGCATCATAACAAGGAAAAGAAGCCTCGTGCAAACCATTTTGCTCAGTTCAAGAACAAATCCAAATCCACTTCAAGTAATGCAGGTTCATCTCAAGAGACAAAGAAGCTTGAATGTTTCAAGGACTTTGCAATAAGTTTGAGGAACAACTCAACTTTTCAGCAAGTGTTTCCAAGGGATGAAGTAGCTGAGGCGGCGCTGCTTTTGATGGATTTATCTTGTGGTTATGTTCACTCTTACTAA 933 0.4191 MTPVSLNPPGPSIQGQNHLFNSLNNQDYHASLFNILDRRQGIGIGELRENDHQDDKLVVWHDGSSSSSSSNHLYNSTFISPQPVMDNPSSSTCDPNLSFSKMEEEDIKNVHGSAKWMSSKMRLMKKMMSTPATDKANNSTTIPISPRIQNQGHENRYSQRSPRNNNNSSNTTRVCSDCNTSSTPLWRSGPNGPKSLCNACGIRQRKARRAMAEAANGLATPINTASTKTRVHHNKEKKPRANHFAQFKNKSKSTSSNAGSSQETKKLECFKDFAISLRNNSTFQQVFPRDEVAEAALLLMDLSCGYVHSY* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2997 310 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 47 309 - -
Lja5g2997 310 MobiDBLite consensus disorder prediction 131 176 - -
Lja5g2997 310 Pfam GATA zinc finger 175 208 IPR000679 GO:0006355|GO:0043565
Lja5g2997 310 MobiDBLite consensus disorder prediction 227 261 - -
Lja5g2997 310 ProSitePatterns GATA-type zinc finger domain. 175 200 IPR000679 GO:0006355|GO:0043565
Lja5g2997 310 ProSiteProfiles GATA-type zinc finger domain profile. 169 205 IPR000679 GO:0006355|GO:0043565
Lja5g2997 310 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 47 309 - -
Lja5g2997 310 Gene3D - 169 266 IPR013088 GO:0006355|GO:0008270
Lja5g2997 310 MobiDBLite consensus disorder prediction 130 176 - -
Lja5g2997 310 CDD ZnF_GATA 174 228 IPR000679 GO:0006355|GO:0043565
Lja5g2997 310 MobiDBLite consensus disorder prediction 246 261 - -
Lja5g2997 310 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 169 209 - -
Lja5g2997 310 SMART GATA_3 169 220 IPR000679 GO:0006355|GO:0043565
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2997 107 308 C2C2-Gata Transcription Factor Family AT4G26150 36.036 1.57e-28 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lja5g2997 GATA 9.8e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2997 - - gmx:100780326 320.087