Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2990 ATGAAGAGAGGTATGGTGGTGGATGAAAATATGTCCAATTTGACATCAGCATCAAGTGAAGTAAGTGCTTCTTCAGAAATCAGGAATGAAAACGGTTCTCTCTATCCTCAGCTCTACTCCTCCAATGCTACAAATCAAGAACCACAACCCAAGAGGAAGAGAAGCCTTCCAGGCCACCCAGATCCTGAGGCTGAAGTGATGGCCTTGAGTCCCCAGACACTCATGGCAACGAACAGGTTCATTTGTGAGATTTGCAACAAAGGGTTTAGAAGAGATCAGAATCTGCAGCTTCATAGAAGAGGGCATAATTTGCCATGGAAGCTGAAGAAAAGAAATGGCAATGAACCAATAAGAAGGAAAGTGTATGTGTGCCCAGAGCCAACATGCGTTCACCATGACCCATCAAGGGCCCTTGGAGACTTAACTGGAATCAAGAAGCACTTTTTCAGGAAGCATGGGGAGAAGAAATGGAAGTGTGAGAAGTGTTCCAAGCGTTATGCAGTTCAATCAGATTGGAAAGCCCACTCCAAAGTTTGTGGCACCAGAGAGTATAGATGTGACTGTGGAACCCTCTTCTCCAGGAGGGACAGTTTTATCACTCACAGAGCCTTCTGTGATGCTTTAGCACATGACAGCACTAGTGCAATCACAGCACTGAACCCTCTACTCTCCTCTCACACTCAAATTCTCAGCCACATGCACAGTAGCAATGGCCTTCAAGCACCACCAGTGAAAAGAGAGCAAGACTTCAATCTAAGACCAGAAATTCCCTCATGGTTGGCTTGCTCTACATCAGTTCCACCACCACCATTACTCCAAACCCATTTGGACCAGTCTTTTGTTATCCACCATGAAAACCCTAACCCTAGTACAACCTTGCTTCCTCATCATCTCAACAACTCCACTAGTTCGAATTATCCTCACATGTCAGCCACTGATTTCCTGCAAAAGGCATCACAAATAGGTGTAACAGTGAGCAAAACAACAACACCATCACCATCACCATTCATGCTTAGACCCCACATGATGATGCAGCAGCAGGTTCACGTGCCTGAAATGGTTATGGCTTCATCTTCAGCTGTTTCTGGAATAGTTATGCCTTCACGTGATGAAATAGGAACTGGTGGTTATTTTACTCATGGCTTGGCTTCTTATGGGAATAAAGCTGCAATCACCTCTGGCTACTTTGAAGCTGATCAAGCATCTTGTCTTTACCATGATATGATGGGTGGTACTGTGCCTCAAACCTATGAGAGGGATATGTTTATGAGGGTTTCCCATCAACAGGTCCTCGGTTCGAAACCAGCAGAATCTACTCAAGAGATGTTTATGAGGGGAATGTTTAACCCAACAAGAGATGCTGATGATGGTAACTTCGAATATGAACTTGTTTCCAAATCAACACAACCCCAGTTTAGTAAAAGTGACAAGGTTTCTTCAGGTGGTGCCGGTGATGATGAAATGACAAGGGATTTTCTGAGTCTGAGAGCGTTTTCTCATATGTCTGGGCTTGATCCTTTGGGTTCTTTATCATATGGCAAGCAAAATCATGACCATGCACAATGGCAAGGCTAA 1575 0.4438 MKRGMVVDENMSNLTSASSEVSASSEIRNENGSLYPQLYSSNATNQEPQPKRKRSLPGHPDPEAEVMALSPQTLMATNRFICEICNKGFRRDQNLQLHRRGHNLPWKLKKRNGNEPIRRKVYVCPEPTCVHHDPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKRYAVQSDWKAHSKVCGTREYRCDCGTLFSRRDSFITHRAFCDALAHDSTSAITALNPLLSSHTQILSHMHSSNGLQAPPVKREQDFNLRPEIPSWLACSTSVPPPPLLQTHLDQSFVIHHENPNPSTTLLPHHLNNSTSSNYPHMSATDFLQKASQIGVTVSKTTTPSPSPFMLRPHMMMQQQVHVPEMVMASSSAVSGIVMPSRDEIGTGGYFTHGLASYGNKAAITSGYFEADQASCLYHDMMGGTVPQTYERDMFMRVSHQQVLGSKPAESTQEMFMRGMFNPTRDADDGNFEYELVSKSTQPQFSKSDKVSSGGAGDDEMTRDFLSLRAFSHMSGLDPLGSLSYGKQNHDHAQWQG* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2990 524 MobiDBLite consensus disorder prediction 465 485 - -
Lja5g2990 524 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 13 502 - -
Lja5g2990 524 SUPERFAMILY beta-beta-alpha zinc fingers 79 177 IPR036236 -
Lja5g2990 524 SMART c2h2final6 80 102 IPR013087 -
Lja5g2990 524 SMART c2h2final6 122 152 IPR013087 -
Lja5g2990 524 SMART c2h2final6 157 177 IPR013087 -
Lja5g2990 524 MobiDBLite consensus disorder prediction 1 64 - -
Lja5g2990 524 Pfam Zinc finger, C2H2 type 80 102 IPR013087 -
Lja5g2990 524 MobiDBLite consensus disorder prediction 9 51 - -
Lja5g2990 524 Gene3D Classic Zinc Finger 77 178 - -
Lja5g2990 524 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Lja5g2990 524 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 102 IPR013087 -
Lja5g2990 524 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 13 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2990 Lja-Chr5 58656729 58660321 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2990 7 331 IDZ Gene Family AT1G55110 54.179 1.28e-113 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja5g2990 zf-C2H2 0.0023 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2990 K25870 - vvi:100257789 524.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2990 5 58656729 58660321 Lja5g2990 5 58656729 58660321 ECH