Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2974 ATGAGTTTCCGCATGGGCTCCAAGGTTTGGGTCCAGGACAGGGACCAGGCATGGGTTGCTGCTGAAGTCCTCGCCTCCGACGGCGGCGGCAACCGTGTACAGCTCGTCACTGATTCCGGCAAGAAGGTTTTGGCTTCGCCGGAGAAATTGTGTCCGAGGGATGCGGATGAAGAGGAGCACGGCGGAGTTGAAGATATGACGAGACTCGCTTACCTGAATGAGCCAGGGGTGTTGTATAATCTTAAGAGAAGATACACTCTCAATGATATCTATACATACACAGGGAGCATTTTAATAGCTGTTAATCCCTTCACAAAGCTCCCTCATTTGTATGATAACCATATGATGGAGCAGTACAAGGGAGCTCCATTGGGTGAGCTAAGCCCACATGTTTTTGCTGTTGCTGATGCATCTTATAGAGCAATGATGAATGAGGGTAAGAGTCAATCTATCTTGGTCAGCGGTGAAAGTGGCGCTGGAAAAACGGAGACAACAAAATTGATTATGCAGTATCTCACCTTTGTTGGTGGACGAGCTGCTGGTGATGATAGATCAGTAGAACAACAAGTTCTCGAATCGAATCCACTTTTAGAGGCATTTGGTAATGCAAGGACTGTTAGGAATGACAATTCAAGTCGATTTGGGAAGTTTGTTGAAATTCAGTTTGATTCAAATGGTCGAATATCTGGTGCTGCAATTAGAACTTACTTATTGGAAAGATCACGAGTAGTGCAGATAACGGATCCTGAAAGAAATTATCACTGCTTTTACCAGTTGTGTGCATTTGAAACGGATGCAGAGAAATATGAATTAGGACATCCAAGTCACTTCCACTATTTAAATCAAAGTAAAATCTATGAACTAGATGGTGTAAGCAATGTGGAAGAGTACGTGAGGACCAGGAGAGCAATGAACATTGTTGGCATTAGTCATGAGGATCAGGAAGCCATATTTCGTACCTTAGCTGCAATTTTACACTTGGGAAACATTGAATTTTCTCCTGGAAAAGAGTATGATTCATCAGTAATAAAGGATGAAAAATCAAGATTTCACATGCAGATGGCGGCTAATCTCTTCATGTGCGATGTAGACCTACTGCTATCAACATTGTGTACTCGTTCAATACAAACTCGAGAAGGAAGTATTGTGAAAGCCCTTGATTGCAACGCTGCTGTTGCTGGCCGGGATACTTTGGCAAAAACTGTTTATGCTCGTTTATTTGATTGGCTTGTTGATAAGATTAATAGGTCTGTTGGGCAAGATATTAATTCCCAGATGCAAATTGGAGTGTTGGATATTTATGGTTTTGAGTGCTTCAAGGATAATAGTTTTGAGCAATTCTGCATCAATTTTGCAAATGAAAAGCTTCAGCAACATTTTAATGAGCATGTATTCAAGATGGAGCAGGAGGAGTATGGCAGAGAAGAAATTAACTGGAGTTACATTGAATTTGTAGACAACCAAGATGTTTTAGAATTGATTGAAAAGAAACCCATTGGTATCGTCGCTCTGTTAGATGAAGCTTGCATGTTTCCAAAGTCAACACATGAAACATTCTCAACCAAGTTGTTTCAGCATTTCCCGTCTCACCCTAGGTTGGGAAAGGAAAAATTCTCGCAAACAGATTTTGCCATTTCTCATTATGCTGGAAAGGTCACTTATCACACAGATACCTTTTTAGACAAAAATCGTGATTATGTTGTTGTAGAACATTGTAATCTATTATCTTCTTCAAAATGCCCCTTTGTTTCTGGTCTCTTCCCATTGCCACCGGAGGAATCTTCAAGGTCATCATACAGGTTCTCTTCAGTAGCTTCTAGATTTAAGCAACAACTTCAAGCACTCATGGAGACCCTTAATTCAACAGAGCCTCATTACGTACGATGTGTTAAGCCAAATTCTTTGAATCGACCCCAAATGTTCGAGAATGGCAGCGTCATCCACCAATTACGCTGTGGGGGCGTTCTTGAAGCTGTTCGGATAAGTCTAGCAGGTTACCCTACTCGAAGAACTTACTCAGAGTTTGTAGATCGCTTTGGGTTAATAGCCCTGGAGTTTATGGATGGAAGTAGTTATGATGATAAAGCTGTGGCTGAGAAAATTTTGCAAAAGCTCAAGCTTGAGAATTTTCAGTTGGGTAGGACCAAAGTATTTCTCAGGGCTGGTCAAATTGGCATTTTGGACTCCAGACGTGCTGAGGTTTTGGACAATGCTGCAAGGTGCATTCAGCGGCAACTGAGGACATTTATTGCACGCAGGGTTTTCATTGCAGTCAGAGCTGCTGCAGTTTGTCTTCAGGCATGTTGCAGGGGATACATTGGCCAAAAGATGTATGCTTCTAAAAGGGAGACAGCAGCAGCTATCTCTGTTCAAAAGTATATACGTATGTGGCTACGGAGGAAGACGTACATGAAATTATGTTCTTCTGCTACTATCATTCAATCCTGTGTTCGAGGTTTCATGACTCGCCAGCGATTTCTGCATATTAAAGAGCATAGAGCTGCTACTTCTATTCAGGCCTGTTGGAGAATGTACAAGTTTAGGTCAGCTTTCCACCGACATCAAGCTTCAATTGTGGCAATACAATGCCTTTGGCGGCGTAGACAAGCAAAACGAGAGCTTCGTAGACTTAAGCAAGAGGCCAATGAAACTGGTGCCCTCCGTTTAGCTAAGAGTAAACTTGAGAAGCAATTGGATGAGCTCACATGGCGTTTGCATCTTGAAAAGAAAATAAGGGTTTCTAATGAAGATGCTAAGCAAATTGAAATTTCCAAACTTCAAAAGATGATAGAAGCTTTGAATCTTGAATTAGATGCGGCTAAATTGGCTACAATTAATGAGTGCAACAAGAATGCAGTTCTACAAAATCAATTTGAATTGTCAATAAAGGAAAAATCAGCTTTAAAGAGAGAGCTAGTTGCTGTGGATGAAATACGAAAGGAAAATGCTATGTTAAAGGTTTCATTGGATGCCTTTGAAAAGAAGTGCACAGCTTTGGAGGTTGAGCTTATAAATGCTCAAAAGGGTCGTGATGAAACCATTGAGAAATTGAGGGAATTTGAACAGAAGTGCTCTCAACTTGAGCAAAATGTGAAAAGTCTTGAGGAAAAGATGTTGAGTTTAGAGGATGAAAATCACGTGCTTCGTCAGAAAGCCTTAAGTGCTCCTCTTAAGAGTAACCGCCAAGGTTTTGCAAAGTCGCTGTCAGAAAGATACTCAAATGCAGTAGCTTCCCGCACAGAGAGGAAGCCCATATTTGAGTCACCCACACCTACAAAACTTATTCCCACTTTCACACCAGGCATGTCAGACTCTCGTCGATCTAAATTAACAGCAGAGAGGCACCAGGATAACTGTGAATTCCTGTCAAGGTGTATCAAAGAAAATTTGGGATTCAAAAATGGCAAACCTCTAGCAGCTCCTATCATATACAAATGTCTTCTTCATTGGCATGCCTTTGAATCTGAGCGCACAGCCATATTTGATTACATAATTGAAGGCATAAATGAGGTTCTAAAGGCTAGGGATGATGATGATGTCTTGCCATATTGGTTGTCCAATACCTCTGCGCTTCTTTGCCTCTTACAGAGGAACTTACGCTCAAATGGCTTTTTAACTACCACTGGTCAACGCTATACTGGATCGGCTGGCTTGGCCAGCAGGACTGTGCATGGACCAAAATCTCCATTGAAGTTTATTGGATATGATGATGGTGTGTCACATGTGGAGGCTAGATATCCAGCTATACTTTTTAAGCAACAACTAACTGCTTGTGTAGAGAAAATTTTTGGTCTTTTACGTGACGATTTGAAAAAGGAGCTTTCTCCACTTCTAGGATTATGTATTCAGGCACCCAAAACAGGAAGACAGCATGGTGGAAAATTATCTAGATCTCCTAGTGGGCTTCCTCAACAACCATCTGGTGGTCAGTGGGCCAACATTGTCAATTTTTTGGATTCACTGATGAGCAAACTTCATGGGAATCATGTGCCATCTTTCTTCATCCGTAAGCTAGTTACCCAGGTTTTTTCCTTCATCAATATTACACTCTTCAACAGTCTTCTACTGCGCCGTGAATGCTGCACGTTCTCCAATGGTGAATATATGAAGTCTGGTCTGGCAGAACTTGAGAAATGGATAGTCAATGCAAAGGAGGAGTATGCAGGAACATCCTGGCACGAGCTGAATTATATAAGACAAGCTGTTGGGTTCTTGGTAATACATCAGAAGAGGAAGAAATCTTTGGATGAAATTCGGCAAGATCTTTGTCCGGCATTGACTGTCAGGCAAATCTATCGAATCAGTACTATGTACTGGGATGACAAGTATGGAACCCAGAGTGTGTCCAATGAGGTAGTTAGTGAGATGAGGGAAATTGTCAGCAGCAAAGACAATCAGAATATAACATCAAACTCTTTCTTACTGGATGATGATATGAGCATTCCTTTCTCGGCTGAAGACATCGACATGGCAATTCCTGCTATAGATCCTGATGAGATTGATCTGCCAGCATTTGTGCCCGAATATTCTTGTGCTCAGTTTCTTAATCCGATTCAGACGTAA 4563 0.4155 MSFRMGSKVWVQDRDQAWVAAEVLASDGGGNRVQLVTDSGKKVLASPEKLCPRDADEEEHGGVEDMTRLAYLNEPGVLYNLKRRYTLNDIYTYTGSILIAVNPFTKLPHLYDNHMMEQYKGAPLGELSPHVFAVADASYRAMMNEGKSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRSVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQFDSNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCAFETDAEKYELGHPSHFHYLNQSKIYELDGVSNVEEYVRTRRAMNIVGISHEDQEAIFRTLAAILHLGNIEFSPGKEYDSSVIKDEKSRFHMQMAANLFMCDVDLLLSTLCTRSIQTREGSIVKALDCNAAVAGRDTLAKTVYARLFDWLVDKINRSVGQDINSQMQIGVLDIYGFECFKDNSFEQFCINFANEKLQQHFNEHVFKMEQEEYGREEINWSYIEFVDNQDVLELIEKKPIGIVALLDEACMFPKSTHETFSTKLFQHFPSHPRLGKEKFSQTDFAISHYAGKVTYHTDTFLDKNRDYVVVEHCNLLSSSKCPFVSGLFPLPPEESSRSSYRFSSVASRFKQQLQALMETLNSTEPHYVRCVKPNSLNRPQMFENGSVIHQLRCGGVLEAVRISLAGYPTRRTYSEFVDRFGLIALEFMDGSSYDDKAVAEKILQKLKLENFQLGRTKVFLRAGQIGILDSRRAEVLDNAARCIQRQLRTFIARRVFIAVRAAAVCLQACCRGYIGQKMYASKRETAAAISVQKYIRMWLRRKTYMKLCSSATIIQSCVRGFMTRQRFLHIKEHRAATSIQACWRMYKFRSAFHRHQASIVAIQCLWRRRQAKRELRRLKQEANETGALRLAKSKLEKQLDELTWRLHLEKKIRVSNEDAKQIEISKLQKMIEALNLELDAAKLATINECNKNAVLQNQFELSIKEKSALKRELVAVDEIRKENAMLKVSLDAFEKKCTALEVELINAQKGRDETIEKLREFEQKCSQLEQNVKSLEEKMLSLEDENHVLRQKALSAPLKSNRQGFAKSLSERYSNAVASRTERKPIFESPTPTKLIPTFTPGMSDSRRSKLTAERHQDNCEFLSRCIKENLGFKNGKPLAAPIIYKCLLHWHAFESERTAIFDYIIEGINEVLKARDDDDVLPYWLSNTSALLCLLQRNLRSNGFLTTTGQRYTGSAGLASRTVHGPKSPLKFIGYDDGVSHVEARYPAILFKQQLTACVEKIFGLLRDDLKKELSPLLGLCIQAPKTGRQHGGKLSRSPSGLPQQPSGGQWANIVNFLDSLMSKLHGNHVPSFFIRKLVTQVFSFINITLFNSLLLRRECCTFSNGEYMKSGLAELEKWIVNAKEEYAGTSWHELNYIRQAVGFLVIHQKRKKSLDEIRQDLCPALTVRQIYRISTMYWDDKYGTQSVSNEVVSEMREIVSSKDNQNITSNSFLLDDDMSIPFSAEDIDMAIPAIDPDEIDLPAFVPEYSCAQFLNPIQT* 1521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2974 1520 SMART DIL_2 1337 1444 IPR002710 -
Lja5g2974 1520 Gene3D - 437 622 - -
Lja5g2974 1520 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 783 881 IPR027417 -
Lja5g2974 1520 Pfam IQ calmodulin-binding motif 832 852 IPR000048 GO:0005515
Lja5g2974 1520 Pfam IQ calmodulin-binding motif 759 773 IPR000048 GO:0005515
Lja5g2974 1520 Pfam IQ calmodulin-binding motif 809 826 IPR000048 GO:0005515
Lja5g2974 1520 Pfam IQ calmodulin-binding motif 784 803 IPR000048 GO:0005515
Lja5g2974 1520 MobiDBLite consensus disorder prediction 1293 1307 - -
Lja5g2974 1520 ProSiteProfiles IQ motif profile. 783 811 IPR000048 GO:0005515
Lja5g2974 1520 Coils Coil 867 887 - -
Lja5g2974 1520 MobiDBLite consensus disorder prediction 1287 1307 - -
Lja5g2974 1520 ProSiteProfiles IQ motif profile. 854 883 IPR000048 GO:0005515
Lja5g2974 1520 Gene3D Myosin VI head, motor domain, U50 subdomain 310 600 - -
Lja5g2974 1520 ProSiteProfiles Dilute domain profile. 1162 1462 IPR002710 -
Lja5g2974 1520 SMART iq_5 734 756 IPR000048 GO:0005515
Lja5g2974 1520 SMART iq_5 782 804 IPR000048 GO:0005515
Lja5g2974 1520 SMART iq_5 805 827 IPR000048 GO:0005515
Lja5g2974 1520 SMART iq_5 830 852 IPR000048 GO:0005515
Lja5g2974 1520 SMART iq_5 757 779 IPR000048 GO:0005515
Lja5g2974 1520 SMART iq_5 853 875 IPR000048 GO:0005515
Lja5g2974 1520 Coils Coil 916 943 - -
Lja5g2974 1520 CDD MYSc_Myo11 75 720 IPR036018 -
Lja5g2974 1520 Gene3D - 666 730 - -
Lja5g2974 1520 ProSiteProfiles Myosin motor domain profile. 61 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja5g2974 1520 Pfam DIL domain 1338 1441 IPR002710 -
Lja5g2974 1520 PANTHER PROTEIN OPAQUE1-LIKE 5 1517 - -
Lja5g2974 1520 Gene3D - 251 308 - -
Lja5g2974 1520 ProSiteProfiles IQ motif profile. 759 787 IPR000048 GO:0005515
Lja5g2974 1520 Coils Coil 1003 1051 - -
Lja5g2974 1520 Coils Coil 975 995 - -
Lja5g2974 1520 Gene3D Kinesin motor domain 64 661 IPR036961 -
Lja5g2974 1520 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 4 55 IPR004009 GO:0003774|GO:0005524|GO:0016459
Lja5g2974 1520 Pfam Myosin head (motor domain) 63 720 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja5g2974 1520 ProSiteProfiles IQ motif profile. 808 835 IPR000048 GO:0005515
Lja5g2974 1520 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 781 IPR027417 -
Lja5g2974 1520 SMART MYSc_2a 55 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja5g2974 1520 Gene3D - 733 784 - -
Lja5g2974 1520 Gene3D - 785 833 - -
Lja5g2974 1520 Gene3D - 834 882 - -
Lja5g2974 1520 PANTHER MYOSIN 5 1517 - -
Lja5g2974 1520 CDD MyosinXI_CBD 1113 1486 IPR037975 GO:0007015
Lja5g2974 1520 PRINTS Myosin heavy chain signature 91 110 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja5g2974 1520 PRINTS Myosin heavy chain signature 480 508 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja5g2974 1520 PRINTS Myosin heavy chain signature 148 173 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja5g2974 1520 PRINTS Myosin heavy chain signature 195 222 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja5g2974 1520 PRINTS Myosin heavy chain signature 427 455 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja5g2974 1520 ProSiteProfiles IQ motif profile. 831 860 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2974 Lja-Chr5 58419307 58439793 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2974 1 1515 Myosins gene family AT4G33200 72.098 0.0 2243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2974 K10357 - gmx:100790815 2644.38