Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2973 ATGGCATTTCAATTTGGATTGTTCCTTCTTCTCACTTTGGTCATTTGTTTGAATGTCGGTTCAGTTGTTTCAGATGATGGAGCCACATTGTTAGAGATGAAGAAGTCATTCAGGGATGTGGAAAACATTCTATATGATTGGACAGATTCACCATCATCAGATTATTGTGCCTGGAGAGGAGTCAGTTGTGATAATGTCACCTTCAATGTTGTTGCACTCAATCTTTCTGGGTTGAATCTTGATGGCGAAATTTCGCCTGCAATTGGGAGTCTTAAGAGCTTGGTCTCTATTGACCTCAGAGAAAACCGGCTCTCCGGGCAGATACCAGATGAGATTGGTGACTGTTCTTCTTTGAAAAACCTGGACTTGTCATTTAATGAAATACGAGGGGATATACCATTTTCAATTTCCAAGTTGAAAGAACTGGAGAACCTGATTTTGAAAAACAATCAGTTAATTGGACCAATTCCTTCAACATTGTCTCAGATTCCTAACTTGAAGATTCTAGACCTAGCACAAAATAATCTTAGTGGGGAAATACCAAGGCTTATCTATTGGAATGAAGTTTTGCAGTATCTGGGCTTGCGAGGGAACAATTTGGCTGGTTCACTATCGCCAGACATGTGCCAGTTAACTGGGTTGTGGTATTTTGATGTGAGAAACAATAGCCTAACAGGAAGTATTCCTGAAGACATTGGCAACTGTACCTCCTTCCAGGTCTTGGATTTATCCTACAACCAACTAACTGGGCAGATACCATATAATATTGGATTTCTGCAAGTAGCAACTTTGTCACTGCAAGGAAATAAACTCTCTGGGCATATTCCATCAGTGATTGGTCTCATGCAAGCACTTGCTGTCCTAGATTTGAGTTGCAACAATTTAAGTGGACCCATTCCCCCTATCTTGGGAAATTTGACCTACACAGAAAAGTTGTACTTGCATGGAAATAAGCTGACCGGCTTCATTCCCCCAGAGCTTGGAAATATGACTAAGCTTCACTATTTGGAACTGAACAATAACCATCTTAGTGGACACATCCCTCCCGAGCTCGGAAAGCTTACTGATCTCTTTGACTTAAATGTCGCTAATAATAACCTTGAGGGGCCAATTCCTGGTAATATTAGCTCCTGCAAAAACCTTAACAGCCTCAATGTCCATGGGAATAAGCTGAATGGAACAATTCCCCCTACTTTGCAGAGCTTGGAGAGTATGACTTCCTTGAATCTTTCTTCCAACAATCTTCACGGTTCCATTCCAATTGAACTGTCACGAATTGGTAATTTGGATACATTGGATATTTCAAACAATGATATATTTGGCTCCATTCCTTCTTCCCTTGGCGACTTGGAACATCTTCTGAAGCTGAATCTAAGCAGAAACAATTTGACGGGAGTTGTTCCAGCAGAATTTGGTAATCTTAAGAGTGTTATGGAAATTGATCTTTCAAATAATGAACTCTCTGGCTTTATTCCTGAAGAACTTAGCCAGCTTCAGAACATAGTATCATTGAGGCTTGAAAACAACAAATTGACAGGGGATGTCGCAACTCTTGTAAATTGTCTTAGTCTCTCTCTGCTTAATGTGTCCTATAACAATTTAGTGGGTGATATTCCCACAAGCAACAACTTTTCCAGGTTCTCCCCTGACAGTTTCATAGGAAACCCTGGTCTTTGTGGTAATTGGCTGAATTTGCCCTGTCATGGTTCCCATCCAGCGGAGCGAGTTACATTATCGAAGGCGGCTATTCTAGGAATTACTCTTGGTGCCCTTGTAATTCTTCTCATGATACTGCTGGCAGCTTGCCGACCGCAGAATCCTCCTTTTCCTGAGGGGCCACTTGACAAGCCAGTTGACAAGCAACTGACTGCACAAGCTTGGAAATTGACAGTTACTTACTCACCACCAAAACTAGTGATTCTTCATATGAATATGGCGCTTCATGTGTATGACGATATCATGAGGATGACTGAAAATCTGAGTGAGAAGTATATAATTGGATACGGGGCATCAAGTACAGTTTACAAATGTGTTCTTAAGAATTGCAAGCCAGTGGCCATCAAGAGGCTCTACTCTCACTACCCACAATGCTTGAAAGAATTTGAGACCGAACTTGAGACAGTTGGAAGCATTAAACACCGCAATCTGGTCAGTCTTCAAGGCTACTCTCTGTCCCCATATGGTCACCTTCTGTTTTATGACTACATGGAAAATGGCAGTCTATGGGATCTTCTTCATGGACCTACCAAGAAGAAAAAGCTGGACTGGAATCTGCGTCTGAAAATTGCACTTGGAGCAGCTCAAGGGCTTGCTTATCTACACCATGATTGCAGTCCCCGCATCATCCACAGGGATGTGAAGTCATCAAATATTTTGCTAGATGCAGACTTTGAGCCTCATCTCACTGATTTTGGCATTGCCAAAAGTCTCTGCGCCTCAAAAACCCATACTTCAACTTACATAATGGGCACAATTGGCTATATAGACCCTGAGTATGCCAGAACTTCCCGGCTCACTGAGAAATCTGATGTGTACAGCTATGGTATTGTTTTGCTTGAGTTGCTAACTGGGAGGAAAGCTGTTGATAATGAATCCAACCTCCATCATCTGGTTTTGTCAAAGACAGCAAGCAATGCTGTAATGGAAACCGTTGATCCGGACATCACTGCAACATGCAAGGATCTGGGAGCAGTGAAAAAGGTTTTTCAGCTTGCTCTCTTATGCGCAAAACGTCAGCCAGCTGACAGGCCCACAATGCACGAAGTGGCACGTGTGCTGGGGAGTCTCGTGCCGCCACCACTCACCCCCCCAAAGCAACCAGCACCCCAACCTGCATCACACCACCCCTCTGCCAAGGTGCCATCGTGCTACATGGATGAGTATGCAAATCTCAAGACTCCACACCTTGTGAACTGTCCCTCCATGAGCACCTCTGATGCACAGCTCTTTCTCAAGTTTGGAGAGGTAATCTCCCAAAACAGTGAGTGA 2988 0.4314 MAFQFGLFLLLTLVICLNVGSVVSDDGATLLEMKKSFRDVENILYDWTDSPSSDYCAWRGVSCDNVTFNVVALNLSGLNLDGEISPAIGSLKSLVSIDLRENRLSGQIPDEIGDCSSLKNLDLSFNEIRGDIPFSISKLKELENLILKNNQLIGPIPSTLSQIPNLKILDLAQNNLSGEIPRLIYWNEVLQYLGLRGNNLAGSLSPDMCQLTGLWYFDVRNNSLTGSIPEDIGNCTSFQVLDLSYNQLTGQIPYNIGFLQVATLSLQGNKLSGHIPSVIGLMQALAVLDLSCNNLSGPIPPILGNLTYTEKLYLHGNKLTGFIPPELGNMTKLHYLELNNNHLSGHIPPELGKLTDLFDLNVANNNLEGPIPGNISSCKNLNSLNVHGNKLNGTIPPTLQSLESMTSLNLSSNNLHGSIPIELSRIGNLDTLDISNNDIFGSIPSSLGDLEHLLKLNLSRNNLTGVVPAEFGNLKSVMEIDLSNNELSGFIPEELSQLQNIVSLRLENNKLTGDVATLVNCLSLSLLNVSYNNLVGDIPTSNNFSRFSPDSFIGNPGLCGNWLNLPCHGSHPAERVTLSKAAILGITLGALVILLMILLAACRPQNPPFPEGPLDKPVDKQLTAQAWKLTVTYSPPKLVILHMNMALHVYDDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSPYGHLLFYDYMENGSLWDLLHGPTKKKKLDWNLRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDADFEPHLTDFGIAKSLCASKTHTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVDNESNLHHLVLSKTASNAVMETVDPDITATCKDLGAVKKVFQLALLCAKRQPADRPTMHEVARVLGSLVPPPLTPPKQPAPQPASHHPSAKVPSCYMDEYANLKTPHLVNCPSMSTSDAQLFLKFGEVISQNSE* 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2973 995 Gene3D Ribonuclease Inhibitor 23 188 IPR032675 -
Lja5g2973 995 Gene3D Ribonuclease Inhibitor 189 277 IPR032675 -
Lja5g2973 995 Pfam Leucine rich repeat 380 439 IPR001611 GO:0005515
Lja5g2973 995 Pfam Leucine rich repeat 452 511 IPR001611 GO:0005515
Lja5g2973 995 ProSitePatterns Serine/Threonine protein kinases active-site signature. 781 793 IPR008271 GO:0004672|GO:0006468
Lja5g2973 995 SMART serkin_6 660 926 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2973 995 Pfam Protein kinase domain 663 923 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2973 995 CDD STKc_IRAK 666 929 - -
Lja5g2973 995 ProSitePatterns Protein kinases ATP-binding region signature. 666 688 IPR017441 GO:0005524
Lja5g2973 995 ProSiteProfiles Leucine-rich repeat profile. 117 140 IPR001611 GO:0005515
Lja5g2973 995 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 982 - -
Lja5g2973 995 Gene3D Transferase(Phosphotransferase) domain 1 736 931 - -
Lja5g2973 995 SUPERFAMILY RNI-like 204 539 - -
Lja5g2973 995 Gene3D Phosphorylase Kinase; domain 1 626 735 - -
Lja5g2973 995 SMART LRR_typ_2 474 498 IPR003591 -
Lja5g2973 995 SMART LRR_typ_2 330 354 IPR003591 -
Lja5g2973 995 SMART LRR_typ_2 450 473 IPR003591 -
Lja5g2973 995 SMART LRR_typ_2 211 235 IPR003591 -
Lja5g2973 995 SMART LRR_typ_2 163 187 IPR003591 -
Lja5g2973 995 SMART LRR_typ_2 282 306 IPR003591 -
Lja5g2973 995 SMART LRR_typ_2 402 426 IPR003591 -
Lja5g2973 995 SMART LRR_typ_2 91 115 IPR003591 -
Lja5g2973 995 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 8 982 - -
Lja5g2973 995 MobiDBLite consensus disorder prediction 930 952 - -
Lja5g2973 995 SUPERFAMILY Protein kinase-like (PK-like) 638 926 IPR011009 -
Lja5g2973 995 MobiDBLite consensus disorder prediction 930 944 - -
Lja5g2973 995 Gene3D Ribonuclease Inhibitor 285 570 IPR032675 -
Lja5g2973 995 ProSiteProfiles Leucine-rich repeat profile. 165 187 IPR001611 GO:0005515
Lja5g2973 995 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
Lja5g2973 995 ProSiteProfiles Protein kinase domain profile. 660 934 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2973 995 SUPERFAMILY L domain-like 24 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2973 Lja-Chr5 58405686 58414516 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2973 93 930 Receptor kinase-like Gene Family AT5G07180 67.938 0.0 1131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Lja5g2973 Pkinase 1.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2973 K20718 - gmx:100782307 1739.93