LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja5g2968	ATGGGGTGGGGTCACCTCGGACGCCATGCCTCCTCCGATTCCGATGCCGGACCGAGCACCACCACGGATCCACGGCGGTTCCCTCTGGCTGCTCAGCCGGAGGTGATGCGCGCCGCTGAGAAAGACGACCAGTACGCATCGTTCGTTTACGAAGCCTGTCGCGACGCCTTCCGCCACCTCTTCGGAACCAGAGTTGCAGTAACTTACCAAAACGAGACAAAACTTCTAGGGCAAATGCTTTACTATGTCCTCACAACAGGGTCAGGACAACAGACTCTTGGAGAGGAATACTGTGATATCACTCAGGTTGCAGAACCTTATGGACTTCCTCCAACCCCTGCGAGGCGTGCTCTTTTCATTGTTTACCAGACAGCTATTCCATATATTGCGGAGCGAATTAGTTCTAGAATGGCTTCCCAAGGCATTGCCCTTTCTGACTCGGAGTTTGCTGAGAGTTATGGTGAAAGTGCCCACGGGAGCAGTAGTTCTCAGATTTCTGCTGCGAATGAACTTCCTCCTTCGCCCATGTCAGGACAATCTATTACAACTCTGACAAGGTTGAAGCAGAAAATGGATAGATTTTGGTTGCATGTGGTTCAAAGATGGCCTACGATACTCCCTTTTGTTCGTGAGTTGCTGCAGATGGTTCTTCGTGCTAACCTTATGTTGTTCTACTTCGAAGGCCTCTATTATCATATATCCAAACGTGCTGCAGGCATTCGTTATGTGTTCATTGGAAAAGCATCAAATCAGAGACCTAGATACCAAATACTAGGAGTATTTCTGCTGATTCAAATTTGTGTACTAGCTGCTGAGGCACTGCGTCGAAGAAATTTTACTTCTATTGCGGGTTCAGTTACTCAAACATCCTATGCAACCCACCATACATCAGCAGGACATGGTTTACCTGTTTTGAATGAGGAAGGTACTTTGGCATCTCCTGATACTGACAAAGGAAGTTGGATCTCTGAATCTTCATCTTCCGAGTATCATGCAACTAGTGGTGTTAGCAAATGCACACTTTGTCTGAGTAATCGCCAACACCCAACAGCTACGTCCTGTGGCCATGTATTTTGCTGGAACTGTATCACAGAATGGTGCAACGAAAAGCCAGAGTGCCCTCTTTGCCGTACCCCTATAACACACTCAAGTCTAGTCTGTGTGTATCATTCAGACTTCTAG	1182	0.4746	MGWGHLGRHASSDSDAGPSTTTDPRRFPLAAQPEVMRAAEKDDQYASFVYEACRDAFRHLFGTRVAVTYQNETKLLGQMLYYVLTTGSGQQTLGEEYCDITQVAEPYGLPPTPARRALFIVYQTAIPYIAERISSRMASQGIALSDSEFAESYGESAHGSSSSQISAANELPPSPMSGQSITTLTRLKQKMDRFWLHVVQRWPTILPFVRELLQMVLRANLMLFYFEGLYYHISKRAAGIRYVFIGKASNQRPRYQILGVFLLIQICVLAAEALRRRNFTSIAGSVTQTSYATHHTSAGHGLPVLNEEGTLASPDTDKGSWISESSSSEYHATSGVSKCTLCLSNRQHPTATSCGHVFCWNCITEWCNEKPECPLCRTPITHSSLVCVYHSDF*	394

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja5g2968	393	PANTHER	PEROXISOME BIOGENESIS FACTOR 10	23	390	-	-
	Lja5g2968	393	CDD	RING-HC_PEX10	338	377	-	-
	Lja5g2968	393	ProSitePatterns	Zinc finger RING-type signature.	354	363	IPR017907	-
	Lja5g2968	393	SUPERFAMILY	RING/U-box	338	382	-	-
	Lja5g2968	393	SMART	ring_2	339	376	IPR001841	-
	Lja5g2968	393	PANTHER	PEROXISOME ASSEMBLY PROTEIN 10	23	390	-	-
	Lja5g2968	393	Pfam	Zinc finger, C3HC4 type (RING finger)	338	382	-	-
	Lja5g2968	393	Pfam	Pex2 / Pex12 amino terminal region	42	276	IPR006845	-
	Lja5g2968	393	MobiDBLite	consensus disorder prediction	1	28	-	-
	Lja5g2968	393	MobiDBLite	consensus disorder prediction	154	177	-	-
	Lja5g2968	393	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	314	390	IPR013083	-
	Lja5g2968	393	ProSiteProfiles	Zinc finger RING-type profile.	339	377	IPR001841	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja5g2968	333	389	C3H Transcription Factor Family	AT4G28270	31.507	1.00e-09	55.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja5g2968	K13346		-	gmx:100816042	676.011