Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2964 ATGAATGTCAAGAACAGCCCTCAAATTCAGGAGAAGGGAACCTCTCCACACCTGTCTCGGCAATCATCTAAGTCAAGTTCCCGCAGGGGAAAGTTTCATCAGAGTGTGGATCCACCTAGTCCCGTATCAGTAGGATGCTGCGCAGGCTTCAGCAGTTCCAAGAATAATGGATCCAATTCCTCAACATCACAGCAAAAAAGTCAGTATCAGCAAAAATACCAAAGGCTTGAATCAAAGGTGGCAAATTTAGAAAAGGAAGTGCAAAAGCAAACAGAACTACGAGTGATGTACAAGAAAAGAATGGAAAGGACACAGGACTACTTGAGGTACTGCCTTCAGATAGCACAGGAGAATGGAATATTGAACCTCATTAAAGAAGAACTTCAACAATCTCCTCTCTCTATCCACACCTCAATCAGCACCATTGCCAGCCCCGCCAAGAGTCCCACTCATTCACACCACCATCCCAGTCTAGCTGCCATCACTAATCAAGCCAAAATCAATGGATGGTATATTGAACCAACTGAGATTCAATTGGAAGAAAAAATTGGGCAAGGAAGCACAGCAGACATTTATAGGGGAACATGGCGTGGATATGATGTAGCTGTGAAGTGCATATTACCTGATTTCTTCAACACAAAAGAAAACGGCGTCGATTTCTTCGCTCAGGAGCTTGAAACTTTATCGAGGCAACGCCACCGTTTTGTGCTTCAGCTTATGGGTGCGTGCCTTGACCCTCCGCGCCACGCATGGGTGGTGACCGAGTATCTGAGCTCAAATTTGAAGGAGTGGTTGCATGGCCCTGGGAACCGGAAGAGAGACAGAACTGTGCCGTTTCCACCCTTCAAAGATAGAGTGGTGATGGCATTGGAAATTGCCCTGGCCATGCAGTACCTCCATGAACAAAAGCCCAAAGTGATTCACCGTGACTTGAAGCCCAGCAATATTTTCCTTGATGATTCTTTGCATGTTAGGGTTGCTGATTTTGGTCATGCTAGATTCTTGGGTGACGGGGAAATGGCTCTCACCGGAGAAACAGGAACTTATGTGTACATGGCACCCGAGGTGATTCGATGTGAACCTTATAATGAAAAATGTGATGTGTATAGCTATGGGGTAATACTAAATGAACTACTAACTGGAAATTACCCTTACATTGAGACGGAATATGGTCCTACTAAGATTGCCATGGAAGTCGTGGAAGGAAAGCTACGGCCTCAGCTTCCGTCTAATGATGTTGACAACCTAGAAGAGCTCATTGACCTCATTTGCCTTTGTTGGGATGGAAATCCATCTACTCGACCATCCTTCGCAAAAATCACTCTTTGCCTCAAAAGTTATGTTTTCTCTTTAGCTCCTTTCACAACTTTCAACGGCGAAATTTGTTAA 1389 0.4478 MNVKNSPQIQEKGTSPHLSRQSSKSSSRRGKFHQSVDPPSPVSVGCCAGFSSSKNNGSNSSTSQQKSQYQQKYQRLESKVANLEKEVQKQTELRVMYKKRMERTQDYLRYCLQIAQENGILNLIKEELQQSPLSIHTSISTIASPAKSPTHSHHHPSLAAITNQAKINGWYIEPTEIQLEEKIGQGSTADIYRGTWRGYDVAVKCILPDFFNTKENGVDFFAQELETLSRQRHRFVLQLMGACLDPPRHAWVVTEYLSSNLKEWLHGPGNRKRDRTVPFPPFKDRVVMALEIALAMQYLHEQKPKVIHRDLKPSNIFLDDSLHVRVADFGHARFLGDGEMALTGETGTYVYMAPEVIRCEPYNEKCDVYSYGVILNELLTGNYPYIETEYGPTKIAMEVVEGKLRPQLPSNDVDNLEELIDLICLCWDGNPSTRPSFAKITLCLKSYVFSLAPFTTFNGEIC* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2964 462 Pfam Protein kinase domain 178 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2964 462 PIRSF ILK 15 143 - -
Lja5g2964 462 PIRSF ILK 111 452 - -
Lja5g2964 462 SMART serkin_6 177 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2964 462 Gene3D Phosphorylase Kinase; domain 1 159 258 - -
Lja5g2964 462 ProSiteProfiles Protein kinase domain profile. 177 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2964 462 MobiDBLite consensus disorder prediction 1 73 - -
Lja5g2964 462 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 39 447 - -
Lja5g2964 462 MobiDBLite consensus disorder prediction 46 73 - -
Lja5g2964 462 MobiDBLite consensus disorder prediction 1 33 - -
Lja5g2964 462 Gene3D Transferase(Phosphotransferase) domain 1 259 450 - -
Lja5g2964 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 306 318 IPR008271 GO:0004672|GO:0006468
Lja5g2964 462 CDD STKc_MAP3K-like 183 441 - -
Lja5g2964 462 Coils Coil 59 100 - -
Lja5g2964 462 ProSitePatterns Protein kinases ATP-binding region signature. 183 204 IPR017441 GO:0005524
Lja5g2964 462 PANTHER OS09G0443600 PROTEIN 39 447 - -
Lja5g2964 462 SUPERFAMILY Protein kinase-like (PK-like) 149 441 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2964 Lja-Chr5 58164733 58172760 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2964 170 445 MAP Kinase Kinase Kinase AT2G17700 36.823 7.83e-50 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-8 Lja5g2964 Pkinase 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2964 - - gmx:102666416 651.358