Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2962 ATGGACGGTGGTGCGTACAATCCTCGCACCGTCGAAGAGGTTTTCAGGGATTTCAAGGGTCGTAGAGCTGCACTCATCAAAGCCCTCACCACTGATGTTGAGGAATTCTACCAGCAGTGTGATCCAGAGAAGGAAAACCTTTGCCTTTATGGATTTCCTAGTGAGCAGTGGGAAGTCAATCTGCCAGCTGAAGAAGTTCCCCCAGAGCTTCCTGAGCCAGCGTTGGGTATCAACTTTGCCAGAGACGGTATGCAAGATAAGGACTGGCTGTCTTTGGTGGCGGTACACAGTGATGCTTGGTTACTTTCTGTGGCTTTTTATTTTGGTGCTAGGTTTGGATTTGATAAGTCTGATAGGAAGCGACTATTTGGTATGATAAATGATCTTCCCACAGTATTTGAGGTTGTTACCGGGGTGGCCAAGAAACAAGGAAAGGAATCTCATAGCAGTAACAAACCCAAATCAAACTCTAAGCGAGGGTCTGAACCTCAGGTGGTGAAGTATTCAAAAGGGTTGATATCGAAGGACGAGGACGAGGGCGAGGGCGAGGACGAGGACGAGGAAGGTTTAGAAGAGGAAGATGAAGAGGAACATGGAGAGACCTTGTGTGGGGCGTGTGGCGAGAGCTATGCAGCTGATGAGTTTTGGATTTGCTGTGACATCTGCGAGAAGTGGTTCCATGGAAAGTGTGTGAAGATTACCCCTGCAAGGGCTGAGCATATCAAACAGTACAAATGTCCATCTTGCAGCAACAAGAGAGCTCGATCTTGA 771 0.4799 MDGGAYNPRTVEEVFRDFKGRRAALIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRLFGMINDLPTVFEVVTGVAKKQGKESHSSNKPKSNSKRGSEPQVVKYSKGLISKDEDEGEGEDEDEEGLEEEDEEEHGETLCGACGESYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARS* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2962 256 ProSiteProfiles Zinc finger PHD-type profile. 200 252 IPR019787 -
Lja5g2962 256 CDD PHD_AL_plant 202 252 IPR044104 -
Lja5g2962 256 SMART PHD_3 202 250 IPR001965 -
Lja5g2962 256 PANTHER CPG BINDING PROTEIN 4 255 IPR045104 GO:0006355|GO:0042393
Lja5g2962 256 Pfam Alfin 10 138 IPR021998 GO:0006355|GO:0042393
Lja5g2962 256 MobiDBLite consensus disorder prediction 178 197 - -
Lja5g2962 256 MobiDBLite consensus disorder prediction 143 197 - -
Lja5g2962 256 ProSitePatterns Zinc finger PHD-type signature. 203 249 IPR019786 -
Lja5g2962 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 251 IPR013083 -
Lja5g2962 256 SUPERFAMILY FYVE/PHD zinc finger 192 253 IPR011011 -
Lja5g2962 256 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 4 255 - -
Lja5g2962 256 Pfam PHD-finger 203 252 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2962 Lja-Chr5 58142703 58149208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2962 1 256 Alfin-like Transcription Factor Family AT3G42790 72.797 2.19e-122 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lja5g2962 Alfin 6e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2962 - - pop:7476667 427.557