Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2955 ATGGCAGAAAGAAATCCAAGGCCATCATCAGATTATTCACCTGATAGTGATTTAACCAGCCAGTGGCCTAATTTTGAGCTCTCTGAGTACTTGGAATTTGATGATAATCATTGGCTAGATGATGATCGAGAAGAGTCATTTGCTTCTAAGCATGTTCCAAATCAGGTTTTTCAAGCCAATGAAGTAGGTGATTTTGGAGGAGGTGGCAGCAACTTTGAGGGGTCTTCTAGAACAATTGATAAGAACATCAAGGGAGCTAGAGAGAGAGTTGCATTCAAAACAAAGTCAGAAGTTGAAATACTAAATGATGGGTTCAAATGGAGGAAGTATGGCAAGAAAATGGTGAAGAACAGCCCCAATCCAAGGAATTACTATAGGTGCTCAGTAGAAGGATGTCCTGTTAAAAAGAGGGTTGAGAGAGATAACGATGATTCAAGATATGTAATCACAACCTACGAAGGCATGCACACTCATCCGAGTTCTTGCTAG 489 0.4049 MAERNPRPSSDYSPDSDLTSQWPNFELSEYLEFDDNHWLDDDREESFASKHVPNQVFQANEVGDFGGGGSNFEGSSRTIDKNIKGARERVAFKTKSEVEILNDGFKWRKYGKKMVKNSPNPRNYYRCSVEGCPVKKRVERDNDDSRYVITTYEGMHTHPSSC* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2955 162 SMART WRKY_cls 101 160 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja5g2955 162 MobiDBLite consensus disorder prediction 1 20 - -
Lja5g2955 162 ProSiteProfiles WRKY domain profile. 96 161 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja5g2955 162 Gene3D WRKY domain 88 154 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja5g2955 162 Pfam WRKY DNA -binding domain 102 159 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja5g2955 162 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 160 IPR044810 GO:0003700
Lja5g2955 162 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 160 - -
Lja5g2955 162 SUPERFAMILY WRKY DNA-binding domain 94 159 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2955 Lja-Chr5 58046999 58048233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2955 1 160 WRKY Transcription Factor Family AT5G26170 43.575 2.01e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja5g2955 WRKY 3.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2955 - - gmx:100796836 203.371