Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2953 ATGGAGGAGGTGTTGTTCATGGTTACGGTGCCGTTAATAGTAGGTAAATCGGTCTGTGATAACTCAACTGTAGTAGCTACCCACATGGATGATGTATCCAGATTTAAGCTGATCGCAGATGCAGGGTCATTAACTGATTCTGTGACTGAGGTTTCCACTGACAGGGTTATAGGTTCAGACGTTGGTCATAGTGGCGTCAATTTGGATGTTGAAGTTGGTATTGCAGCAGTGACACCGCCAGAACCGGATAGGGTAGGAGATAGTTCTTTGTCGAGTATGATATCGCATGATAAAAGTGCTATGGTTACTAGTGAGGAGGAGGATTCGTTATCGTTGGAAGGTGACCAGTTAATTGATAGCTCATGCTCTCTATCAGCAATAAGTGAGAACAGTAGTGTCTATGGAGAAGAGTTCATTGGTTCTGATGCTACTTCAGAGTTTGGGACACCATGTTCCATAGACATAGAGAAGAGCATCTGTCCGGTCAATATTGCTGGCCGGACTGCTGATTTGGGAGAGTCAAATGTTGATACTGACATTATGAGTGAATCACATGCCGTGGCAGTGAGCCTTGATGAAGAGACTGGAGTTGGATCTGGCCCAAACCCTTCTCCAGTTGATCTGTCTCAAGAAAAGCAGGTGAATGTAACAGTTGGTCGGAGTGTTTTTGAATTGGTTTATACCCCACTTTGGGGATTCATATCTCTTTGTGGAAGAAGACCTGAAATGGAAGATGCTGTTGCAACTGTACCTCGATTTTTGAAAATCCCTATTCAAATGCTAATTGGTGATCGGGTACTTGATGGGTTAAACCAGTGTTATAATCAACAGATGACCCATTTCTTTGGAGTCTATGATGGCCATGGTGGTTCTCAGGTGGCAAAGTATTGTCGTGAACGTATGCATTTGGCCTTGGCTGAGGAAATAGAATTTGTCAAGGAAGGTCTAGTTAATGGAAGTATCAATGATGACTGTCAAGATCAGTGGAAAAAAGCTTTCACCAATTGTTTCTTAAAGGTTGATGCTGAAGTTGGAGGAAAAGTTAATAATGAACCTGTTGCCCCAGAAACTGTGGGCTCCACTGCTGTTGTTGCTCTCATCTCTTCGTCTCATATTATAGTCTCAAATTGTGGTGATTCAAGAGCGGTTCTGTGTCGTGGCAAAGAACCTCTGGCATTATCAGTGGACCATAAACCAAACCGAGAGGATGAATATGCAAGAATCGAGGCAGCTGGAGGGAAGGTGATACAATGGAATGGCCATCGTGTATTTGGTGTTCTTGCAATGTCAAGGTCTATTGGTGATAGATATTTGAAGCCGTGGATTATTCCGGAACCGGAAGTTAGATTTCTTCCTCGTGCAAAAGAGGACGAGTGTCTCATTCTGGCCAGTGATGGTCTGTGGGATGTCATGACAAACGAAGAGGCGTGCGACTTGGCTCGGAAGCGAATACTTCTATGGTACAAGAAAAACGGCTTCGAACTAAGCTCAGAAAGGGGAGAGGGAGTTGATCCCGCTGCACAAGCTGCGGCAGAGTTCCTATCAAACCGCGCTCTACAAAAAGGAAGCAAAGACAACATCACTGTGATTGTGGTTGATTTAAAACCTCAAAGAAAATATAAGAGCAAGACATGA 1635 0.4391 MEEVLFMVTVPLIVGKSVCDNSTVVATHMDDVSRFKLIADAGSLTDSVTEVSTDRVIGSDVGHSGVNLDVEVGIAAVTPPEPDRVGDSSLSSMISHDKSAMVTSEEEDSLSLEGDQLIDSSCSLSAISENSSVYGEEFIGSDATSEFGTPCSIDIEKSICPVNIAGRTADLGESNVDTDIMSESHAVAVSLDEETGVGSGPNPSPVDLSQEKQVNVTVGRSVFELVYTPLWGFISLCGRRPEMEDAVATVPRFLKIPIQMLIGDRVLDGLNQCYNQQMTHFFGVYDGHGGSQVAKYCRERMHLALAEEIEFVKEGLVNGSINDDCQDQWKKAFTNCFLKVDAEVGGKVNNEPVAPETVGSTAVVALISSSHIIVSNCGDSRAVLCRGKEPLALSVDHKPNREDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVRFLPRAKEDECLILASDGLWDVMTNEEACDLARKRILLWYKKNGFELSSERGEGVDPAAQAAAEFLSNRALQKGSKDNITVIVVDLKPQRKYKSKT* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2953 544 Pfam Protein phosphatase 2C 265 527 IPR001932 -
Lja5g2953 544 CDD PP2Cc 235 534 IPR001932 -
Lja5g2953 544 PANTHER ALPHABET, ISOFORM E-RELATED 105 544 - -
Lja5g2953 544 Gene3D - 217 544 IPR036457 -
Lja5g2953 544 ProSiteProfiles PPM-type phosphatase domain profile. 230 534 IPR001932 -
Lja5g2953 544 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 105 544 - -
Lja5g2953 544 ProSitePatterns PPM-type phosphatase domain signature. 281 289 IPR000222 GO:0043169
Lja5g2953 544 SUPERFAMILY PP2C-like 214 536 IPR036457 -
Lja5g2953 544 SMART PP2C_4 220 532 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2953 Lja-Chr5 58012015 58017587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2953 130 544 PP2C-type Phosphatase Gene Family AT1G17550 55.035 3.43e-158 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2953 K14497 - gmx:100805281 812.372