Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2951 ATGTCGACGGTGTACGTTCTTGAACCGCCAACTAAGGGGAAGGTGGTGGTGAACACGACGCGCGGCCCTATTGACATTGAGCTCTGGCCCAAAGAGGCTCCCAAAGCCGTCAGGAACTTCGTGCAGCTCTGCCTCGAAGGCTACTACGACAACACCATCTTCCACCGCATCATCAAGGACTTCCTCATCCAGTGTGGTGACCCCACCGGTACCGGCACCGGAGGTGAAAGTATTTATGGGGATGCTTTTGCTGATGAGTTCCACTCGCGGCTAAAGTTCAAACACAGAGGTATAGTTGCAATGGCCAATGCTGGATCTCCGAATTCCAATGGAAGTCAGTTTTTCATAACTCTCGATCGCTGTGACTGGCTCGATAAGAAGCATACTATTTTTGGAAAGGTGACGGGAGATACTTTGTATAATCTGTTGAGACTGGGTGAAGCTGAAACCGACAAGAATGACCGACCTTTAGAGCCACCAAAGATATTATCCATTGAGGTGTTGTGGAACCCATTTGAAGATATTATTCCAAGAACGCTTCAGAAATCTCAGACTAAAGCTACAACTGATGCAGAAAAAAAAGATTCAAAGAAGAAAGGAGTTAAGTATGTTTCCCCTTTACCTAAGAAAGCTGTCTTCTTGGAACTCAATGGAGTGCAAGTGTCTGCCCTTTTAATTAACACGTTGCTTGTTTTATTATTATTTTTTGTAAAATTGAATTGTAGGAATTTGAGCTTGCTTTCATTTGGGGAAGAAACTGAAGAAGATGAAAAGGAATTGACATTAGTGAAGCAAAAGATCAAGAGCAGTCATGATGTCTTGAATGATCCTCGTCTTCTAAAGGATGAAACTTCTATTAATGATTTGGGTTCATCTGATGATAAATCAAGAAGGAATCTGCAATTATCTGTAAGAGATGCACTTAGCTCAAAGAAAGAAGAGCCTCAGAAGGATTCAAAAGCTGATAATTCAGCTCATCTTGATTCCCGTGATGACGATGAAGCAGGTTTTGATTCAAGAATGCGCATGCAAATACTCAAAAAGCGGAAGGAATTGGGCGATCTCCCTCCCAAGCCAGATTTGCAAAATGGAAGACCCAGTTCAGAGGATCGTGATACGTCAGCAGCCAGGTCCGGTGCTTTAAGTTCTGATGAGGATCAACGAAGAGCGGAAAAATTGTCCTTGAAGAAAAAGGGAGTAGGATCTGAAGCAAGAGCTAAACGAATAGCTAATGCAGATACAGATTTTCAGCTACTGAATGAAGCTGAGAGAGGAAGACAGTTGCAGAAGCAGAAGAAACGCAGACTTCAGGGGCGTGAAGATGATGTTCTGGCAAAACTTGAAAAATTTAAGAATGCTCAATCAGCAAAGGAGAAACCCACAACTGATGAATCTGAACAAGTTAATAAGGAGGAATTATCTGACTGGAGAAGCGCTACCTTAAAATTTGGCCCTGAGTCTGGCAAGGACCGGATGTCACGCAAAGAGGACCCAAATGACTACGTTGTGCATGATCCTCTTTTGGAGAAAGGGAAGGAGAAGTTTAACAAGATGCAAGCCAAACAAAAGAGACGAGAACGAGAATGGGCTGGGAGATCCCTTACTTGA 1608 0.4328 MSTVYVLEPPTKGKVVVNTTRGPIDIELWPKEAPKAVRNFVQLCLEGYYDNTIFHRIIKDFLIQCGDPTGTGTGGESIYGDAFADEFHSRLKFKHRGIVAMANAGSPNSNGSQFFITLDRCDWLDKKHTIFGKVTGDTLYNLLRLGEAETDKNDRPLEPPKILSIEVLWNPFEDIIPRTLQKSQTKATTDAEKKDSKKKGVKYVSPLPKKAVFLELNGVQVSALLINTLLVLLLFFVKLNCRNLSLLSFGEETEEDEKELTLVKQKIKSSHDVLNDPRLLKDETSINDLGSSDDKSRRNLQLSVRDALSSKKEEPQKDSKADNSAHLDSRDDDEAGFDSRMRMQILKKRKELGDLPPKPDLQNGRPSSEDRDTSAARSGALSSDEDQRRAEKLSLKKKGVGSEARAKRIANADTDFQLLNEAERGRQLQKQKKRRLQGREDDVLAKLEKFKNAQSAKEKPTTDESEQVNKEELSDWRSATLKFGPESGKDRMSRKEDPNDYVVHDPLLEKGKEKFNKMQAKQKRREREWAGRSLT* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2951 535 Coils Coil 419 439 - -
Lja5g2951 535 PANTHER SPLICEOSOME-ASSOCIATED PROTEIN CWC27 HOMOLOG 5 202 - -
Lja5g2951 535 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 167 IPR002130 GO:0000413|GO:0003755
Lja5g2951 535 MobiDBLite consensus disorder prediction 434 477 - -
Lja5g2951 535 MobiDBLite consensus disorder prediction 382 410 - -
Lja5g2951 535 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 22 167 IPR002130 GO:0000413|GO:0003755
Lja5g2951 535 CDD cyclophilin_CeCYP16-like 8 179 - -
Lja5g2951 535 SUPERFAMILY Cyclophilin-like 14 184 IPR029000 -
Lja5g2951 535 Gene3D - 2 182 IPR029000 -
Lja5g2951 535 MobiDBLite consensus disorder prediction 306 356 - -
Lja5g2951 535 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 5 202 IPR044666 -
Lja5g2951 535 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 66 IPR002130 GO:0000413|GO:0003755
Lja5g2951 535 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 98 113 IPR002130 GO:0000413|GO:0003755
Lja5g2951 535 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 125 IPR002130 GO:0000413|GO:0003755
Lja5g2951 535 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 IPR002130 GO:0000413|GO:0003755
Lja5g2951 535 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 141 IPR002130 GO:0000413|GO:0003755
Lja5g2951 535 MobiDBLite consensus disorder prediction 487 535 - -
Lja5g2951 535 MobiDBLite consensus disorder prediction 306 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2951 Lja-Chr5 57990623 57999492 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2951 9 172 U-box Gene Family AT5G67530 48.780 1.92e-43 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2951 K12737 - gmx:100793148 752.281