Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2950 ATGTCTTCCTGTAATGGCGGCACAACACCACCCTTAAACGTCACCATGGTGGTCGTAGATAAAGACAAGTACAGTGCCCATGCCTTTCGTTGGGCAACAAATTATATGGAGAACCAAGTCATCATCGCAGTTCATGTCAAGCATAAAAACATGCCTCATCAGGGCACCAATGTTTTACCTCCCAACAAAGATGAGGTAGCTAGTATTTTCAATCCCTTACGTCAAATGTGTCATCACAAAGTTGTTAAGATGAAAGAAGCTGTAATCGATGATAGTGATATTGTAAGAGGAGTTTTGGAATATGTAGAGAGGAATCACATCCAAACTATTGTTCTTGGTGCACCCTCCTCAACCAAGAATGCTTTGGTGAAGTCTTTTAGCCTCAGAACCGGAAGCAAAAAATTGAAAGGGGGCCAAGATGTGCCAGCAGCCATAATCCAATCAGCCCCAGAATATACTTCTGTGTACGTGATTTCAAAAGGGAAAATAGTGGCAGCTAGACAAGGAAAACAACCATTTCAACGCTCACCTAGTGAATCAGAAAAAGGAGTAAGAGCTCAAGCAATTAGAAGAGGGAGCACAAATTGTAGATCATCAAGATCATCTGCATATGAGACTCCAAGGAGTTCTTCAGTTAACCACACAAGGGAGAGCTCTGATGTATGCTACAACTTAAGCTTGAGCAAAACTGAGTCTTCAGGATCACACAAGTTTGATTCAGTGGATATATACAAAAAAGATGGATATACACGCTCTTCATCTGATTCCCAATCTTCTGGAGATGTGGAATCTGAAATGAAAGTATTGAGGCTCAAACTAAAGCAAACAATGGAAATGTACAACTCAGCTTGCAAAGAAGCTATCTCAGCCCAAAACAAGGCTAAAGAGATTAATCAATGGAAGTTGGAGGGGGCACGAAAGGTTGAGGAAGCTAAGTTGTCTGAAGAAGCAGCTCTTGCACTAGCAGAAGAGGAGAAGGCTAAAGCCATCGCCGCGTTGAAAGCCACGGAGGAAGCCATGAAAAAGGCTGAAGAGGAGGCACTAAGAAGATTACAAGCTGAAAGGAAGGCTAGGAGAGAGGAAGAAGAAAAGGTTCGGGCATTAACCGTGTTGGCTCAGAAGGATATTCGATATAGATTATACACCATAGATGAGGTTGAAAATGCTACTCAAAACTTCTCCATGTCAATGAAACTAGGTGAAGGTGGATATGGACCTGTGTTTAAAGGCCAACTTGATCATACCCCAGTTGCAATCAAGCTCTTAAACCCAGATGCTCATCAGGGTAGGAAACAGTTCCAACAAGAGGTTGAGATACTATCCAACATAAGGCATCCCAATTTGGTCCTTCTCCTTGGTGCATGTCCTGATTATGGATGCCTAGTGTATGAATTCATGGAGAATGGAACCTTAGAGGACAGGTTAATGCGAAAACAAAACACTCCACCAATCCCATGGAGGAAGCGTTTTGAGATAGCTGCAGAGATTGCAACTACACTCCTTTTCCTTCACCAATCAAAGCCAGAGCCCCTCGTTCACCGTGACCTCAAACCTGGAAACATTCTCGTGGATCGGAATTACGTGAGCAAAATCAGCGACGTGGGGCTAGCGCGATTAGTCCCAGCCTCAGTCGCTGATTGTGTCACGCAGTACTACATGACTTCAGCTGCTGGAACCTTTTGTTACATTGATCCTGAGTACCAGAAAACAGGGATGTTAACTCCAAAATCAGATATATATTCATTGGGGATTGTTCTGCTGCAGATAATCACAGCCAAGCCTCCAATGGGGCTAACTCATCATGTGAAAAGTGCAATTGATAAAGGAAGGTTTTTAGATATTCTTGACCCTGCGGTGACTGATTGGCCAGTGAAAGAGGCTTTGGCATTTGCTAAACTCTCACTGAGTTGTGCTGAACTTAGCAAGAAGGATAGGCCAGATCTTGCATCAGTTATTGTGCCAGAGCTTAATCGTTTAAGAGATTACGGGAATAAGCAAAATTCAAAACCATAG 2013 0.4302 MSSCNGGTTPPLNVTMVVVDKDKYSAHAFRWATNYMENQVIIAVHVKHKNMPHQGTNVLPPNKDEVASIFNPLRQMCHHKVVKMKEAVIDDSDIVRGVLEYVERNHIQTIVLGAPSSTKNALVKSFSLRTGSKKLKGGQDVPAAIIQSAPEYTSVYVISKGKIVAARQGKQPFQRSPSESEKGVRAQAIRRGSTNCRSSRSSAYETPRSSSVNHTRESSDVCYNLSLSKTESSGSHKFDSVDIYKKDGYTRSSSDSQSSGDVESEMKVLRLKLKQTMEMYNSACKEAISAQNKAKEINQWKLEGARKVEEAKLSEEAALALAEEEKAKAIAALKATEEAMKKAEEEALRRLQAERKARREEEEKVRALTVLAQKDIRYRLYTIDEVENATQNFSMSMKLGEGGYGPVFKGQLDHTPVAIKLLNPDAHQGRKQFQQEVEILSNIRHPNLVLLLGACPDYGCLVYEFMENGTLEDRLMRKQNTPPIPWRKRFEIAAEIATTLLFLHQSKPEPLVHRDLKPGNILVDRNYVSKISDVGLARLVPASVADCVTQYYMTSAAGTFCYIDPEYQKTGMLTPKSDIYSLGIVLLQIITAKPPMGLTHHVKSAIDKGRFLDILDPAVTDWPVKEALAFAKLSLSCAELSKKDRPDLASVIVPELNRLRDYGNKQNSKP* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2950 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 511 523 IPR008271 GO:0004672|GO:0006468
Lja5g2950 670 SMART serkin_6 393 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2950 670 CDD STK_N 14 161 - -
Lja5g2950 670 Gene3D HUPs 15 130 IPR014729 -
Lja5g2950 670 Pfam Protein kinase domain 395 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2950 670 MobiDBLite consensus disorder prediction 168 217 - -
Lja5g2950 670 SUPERFAMILY Protein kinase-like (PK-like) 375 652 IPR011009 -
Lja5g2950 670 ProSiteProfiles Protein kinase domain profile. 393 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2950 670 MobiDBLite consensus disorder prediction 191 217 - -
Lja5g2950 670 PANTHER OS02G0152300 PROTEIN 9 665 - -
Lja5g2950 670 Coils Coil 305 368 - -
Lja5g2950 670 Gene3D Transferase(Phosphotransferase) domain 1 466 669 - -
Lja5g2950 670 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 9 665 - -
Lja5g2950 670 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 16 116 - -
Lja5g2950 670 Gene3D Phosphorylase Kinase; domain 1 369 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2950 Lja-Chr5 57977872 57982375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2950 84 663 Receptor kinase-like Gene Family AT5G12000 57.143 0.0 653
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lja5g2950 Pkinase 3.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2950 - - var:108336981 747.658