Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2948 ATGACTACTAAAAGGGTTACATGGAAGTCTATGAACTTGATCCTGAGCTGTTACAAGACTAAGTTCCCATTGGAGGATTCTGAGAAACGGGTTTTGAAACAAGGATCATTCCAGAGGTTGTGTCTATCTGATGTAAGCAACTCAAGCTCTACTCAAGCCATTGAAGATCTTTCAGTTTCATTTGGTGGTTCAAAACTTTATGCATTCACACTTGAGGAGCTGAGAGAGGCAACAAGAAATTTCTCATGGAGTAACATGCTTGGTGAAGGAGGGTTTGGACCTGTTTACAAGGGCTTTTTTGATGACAGACTCAGGCCTGGTTTGAAGGCTCAGACAGTGGCTGTGAAACAATTGGACTTGGATGGCTTGCAAGGTCACAGGGAGTGGCTGGCAGAGATTATATTTCTTGGACAGCTAAGGCATCCACATCTTGTTAAGTTAATTGGGTACTGTTATGAGGATGAAAACAGGCTATTGGTGTATGAATACATGCCAAGAGGCAGCTTGGAGAATCAACTCTTCAGAAAATACTCTGCTGCCATGCCATGGTCTACAAGGATGAAAGTTGCATTAGGTGCTGCTAAGGGGCTAGCTTTTCTTCATGAAGCAGATAAACCTGTAATCTACAGGGATTTCAAAGCTTCAAACATCTTGCTAGACTCAGACTATACAGCTAAACTCTCAGACTTTGGTCTTGCTAAGGATGGCCCTGATGGGGAAGAAACACATGTAACAACGCGCATCATGGGAACACATGGCTATGCCGCTCCTGAGTACATCATGACAGGTCACCTTACAACCAAGAGTGATGTGTACAGCTATGGAGTTGTTCTGCTGGAACTGCTGACAGGAAGAAGGGTAGTGGAAAAGTCCCAGTCGAATCGAGGGAGGAGCTTGGTGGAATGGGCAAGACCTATGCTGAGAGACCAGAAGAAGCTGCACCGGATCATAGACAGAAAACTTGAAGGCCAATTTCCATCCAAAGGAGCCATGAAAGTTGCTATGTTGGCTTTTAAATGCTTGAGCCACCATCCAAATCCAAGGCCCTCCATGAGTGATGTGGTGAAGGTTTTGGAGCCACTTCAGGACTTTGACGATGTTCTCATAGGGCCATTTGTGTATGTCGCTGTCTATGAAAACGGCGACAAGGATAAAATATAG 1161 0.4462 MTTKRVTWKSMNLILSCYKTKFPLEDSEKRVLKQGSFQRLCLSDVSNSSSTQAIEDLSVSFGGSKLYAFTLEELREATRNFSWSNMLGEGGFGPVYKGFFDDRLRPGLKAQTVAVKQLDLDGLQGHREWLAEIIFLGQLRHPHLVKLIGYCYEDENRLLVYEYMPRGSLENQLFRKYSAAMPWSTRMKVALGAAKGLAFLHEADKPVIYRDFKASNILLDSDYTAKLSDFGLAKDGPDGEETHVTTRIMGTHGYAAPEYIMTGHLTTKSDVYSYGVVLLELLTGRRVVEKSQSNRGRSLVEWARPMLRDQKKLHRIIDRKLEGQFPSKGAMKVAMLAFKCLSHHPNPRPSMSDVVKVLEPLQDFDDVLIGPFVYVAVYENGDKDKI* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2948 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Lja5g2948 386 SUPERFAMILY Protein kinase-like (PK-like) 58 359 IPR011009 -
Lja5g2948 386 PANTHER OS01G0588500 PROTEIN-RELATED 21 383 - -
Lja5g2948 386 CDD STKc_IRAK 87 361 - -
Lja5g2948 386 Pfam Protein tyrosine and serine/threonine kinase 83 358 IPR001245 GO:0004672|GO:0006468
Lja5g2948 386 Gene3D Phosphorylase Kinase; domain 1 42 163 - -
Lja5g2948 386 PANTHER KINASE 1B 21 383 - -
Lja5g2948 386 ProSiteProfiles Protein kinase domain profile. 81 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2948 386 Gene3D Transferase(Phosphotransferase) domain 1 164 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2948 Lja-Chr5 57964712 57968347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2948 69 358 Glycoside Hydrolase AT3G07070 52.560 8.09e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lja5g2948 PK_Tyr_Ser-Thr 1.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2948 - - gmx:100802636 701.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2948 5 57964712 57968347 Lja5g2948 5 57964712 57968347 ECH
Lja1g3991 1 50661277 50663832 Lja5g2948 5 57964712 57968347 ECH
Lja3g1596 3 17518093 17520554 Lja5g2948 5 57964712 57968347 ECH