Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2946 ATGATGAAAATGACATTGCATTGGAGCAAAAGGGTCACCCTCCTCATAGATTCATGGGAGACCGATTCATGGCTGAGTTACATTCTCAGTTTACTCGCGTGCCTCATGGTTTCCGCTTTCTACCAGTATCTAGAGAGTCTCCGGTTTCGGCTGAAGAGAGGGGAGTCTCCGGGGGCGGAGATACGGACGCCACTTCTGCGGCGGAACAATGTTGCCGGGGGTAAGGTTGCTGAAGCGGTTTTGTTCGGGGTGGACTCTGCTGTTGGGTATTTGTTGATGTTGGCTATAATGTCATTCAATGGAGGGGTGTTTTTGGCTATTGTGGTGGGTCTTATGCTAGGTTACTTCTTCTTCAGGTGTCAGGGTGGAGACGGTGCTGCAGTTGAAGTTGACATTGATGATTCTTGTGCATGCGCTTAG 420 0.4976 MMKMTLHWSKRVTLLIDSWETDSWLSYILSLLACLMVSAFYQYLESLRFRLKRGESPGAEIRTPLLRRNNVAGGKVAEAVLFGVDSAVGYLLMLAIMSFNGGVFLAIVVGLMLGYFFFRCQGGDGAAVEVDIDDSCACA* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2946 139 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 34 - -
Lja5g2946 139 PANTHER SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS 1 139 IPR007274 GO:0005375|GO:0016021|GO:0035434
Lja5g2946 139 Pfam Ctr copper transporter family 72 118 IPR007274 GO:0005375|GO:0016021|GO:0035434
Lja5g2946 139 Pfam Ctr copper transporter family 4 53 IPR007274 GO:0005375|GO:0016021|GO:0035434
Lja5g2946 139 PANTHER CTR FAMILY COPPER TRANSPORTER 1 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2946 Lja-Chr5 57955055 57955474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2946 1 139 Inorganic Solute Cotransporters AT5G20650 50.336 5.84e-45 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2946 K14686 - gmx:100795071 184.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2946 5 57955055 57955474 Lja5g2946 5 57955055 57955474 ECH
Lja1g3990 1 50654205 50655104 Lja5g2946 5 57955055 57955474 ECH
Lja4g1505 4 13904044 13904526 Lja5g2946 5 57955055 57955474 ECH
Lja3g1603 3 17687445 17689336 Lja5g2946 5 57955055 57955474 ECH