Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2943 ATGGCTAGTTCTGACCCCATTATTACTACTACTAGCATCACCACAACGCCTTCTTGTAATATAAACCTTGCCTGCACCACCGATATTAGCAATAGTAGTAGCAATGTTAAGTTATACAAAGGTGTGAGGAAGAGGAAATGGGGGAAATGGGTATCTGAGATAAGGCTACCCAATAGCCGTGAGAGAATATGGTTGGGTTCCTATGACACGCAAGAGAAGGCTGCTAGAGCCTTCGATGCAGCACTGTATTGCTTGCGTGGTCGCCATGCCACTTTCAATTTCCCTGACACCCCTCATAAAGTGGAACTTCATTGTGTTGGAGTTGGGGACCAATCACTTTCCCCAGAAGAAATTCGAGAGGTTGCTGCTAAGTTTGCCAACAACATGGAGGTGATTCAAGAACAAGAAGGAGAAGGAGAAGGAGAAACATCACAACAACATGGTGCTGATGATTTGTTTGAGTTCAACATTAACACTAGTGTAACAGAGAGCTCTCCATCAAACTCATGTTCTTTGAATGATTCCTATGATATGGGCTATGGGGACATGAGGACCTTGGATTGGACAATTTCGGATATGTTGGATGACTTGAATAATGGGGTTAATGCTGTTGGCTCCGATTTTGGGCTCTATTATTCTGGGCCAGATAATAATATGGAGTACTCGGATGAGTTATGTTCAGTTCAACACCCAACACTTTTTGAGGATGAAATGGAAGGTGGTGATGCTTTTTCCAACCATTCATTCCTTTGGAGTTGGAGCTTTTGA 768 0.431 MASSDPIITTTSITTTPSCNINLACTTDISNSSSNVKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTQEKAARAFDAALYCLRGRHATFNFPDTPHKVELHCVGVGDQSLSPEEIREVAAKFANNMEVIQEQEGEGEGETSQQHGADDLFEFNINTSVTESSPSNSCSLNDSYDMGYGDMRTLDWTISDMLDDLNNGVNAVGSDFGLYYSGPDNNMEYSDELCSVQHPTLFEDEMEGGDAFSNHSFLWSWSF* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2943 255 Gene3D AP2/ERF domain 38 96 IPR036955 GO:0003700|GO:0006355
Lja5g2943 255 CDD AP2 37 97 IPR001471 GO:0003700|GO:0006355
Lja5g2943 255 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF018 27 255 - -
Lja5g2943 255 ProSiteProfiles AP2/ERF domain profile. 38 95 IPR001471 GO:0003700|GO:0006355
Lja5g2943 255 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700|GO:0006355
Lja5g2943 255 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Lja5g2943 255 Pfam AP2 domain 39 87 IPR001471 GO:0003700|GO:0006355
Lja5g2943 255 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 27 255 - -
Lja5g2943 255 SUPERFAMILY DNA-binding domain 38 96 IPR016177 GO:0003677
Lja5g2943 255 SMART rav1_2 38 101 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2943 Lja-Chr5 57898149 57898916 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2943 31 130 AP2-EREBP Transcription Factor Family AT1G19210 71.000 3.16e-43 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja5g2943 AP2 3.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2943 - - gmx:112999363 213.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2943 5 57898149 57898916 Lja5g2943 5 57898149 57898916 ECH
Lja1g3982 1 50539901 50541021 Lja5g2943 5 57898149 57898916 ECH