Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2937 ATGGAATCGGAGGATCTGTTGAAACAGGAATTGGAGGAATTGCAGAAACAATTGGGGAAGAAGCAAAAGTTTGAGAGCGCTGTTTCATCTCTCAAATCGTTGCTTCCACAAACTTATCCTTCAGCTTCTCCTTCGCTCCGCAAATCTTTTTATTCAGTTATATGCCGAGTTGCTACGGTGTTGAAGACTAGATATACAGCACCGGGTTTCTGGAATGCTGGCCTAGGCCTTTTTGAGCAGGCTTTACTCCTAGTTTCTGAACCTTCTGAGAAGGCGCACCTGAAGGCTTGCATTGCTAATGCCAAGGAACATTTGCATCTAGAAGACAACCCATCACAAGCTTTGCAACCTGCAGAGAATCAAGCAAACAGAGGATATCTTTTTGAGGGACACCTTACAGTGGATACAGAGCCACCACAACCTCAATGGTTGGTGCAGTCAAACCTCTTGGCGACTGCTGCTACACTATTTGCTGCTGAATCCTCCCGAGGTTCAGCAGCAAATGATACTACACCAGAAGATGCGGCAAATGTGCTTGAAGATCTTATGAATAGATTGGAAGAAGTTGTGCCCCTGATGGTGGATGAAGGTGATTTTGTAGCTCCAAAAGCCCCTCCTGCCAGTAAAGAAGTTGTGGCAAAACTTCCTGTTGTTACTCTCACAGAGGAAATACTTGCTAATATTGGGAAAGATGCAGAGTGTGCAATTTGCAGGGAAAACTTGGTTGTAAATGACAAAATGCAAGAGTTACCATGCAAGCACACGTTCCATCCACCATGTCTTAAGCCGTGGCTGGATGAGCATAATTCATGTCCAATCTGTCGGTACGAGCTGCAAACTGATGATCATGCCTATGAGAGTTGGAAGGAACGGGAAAAAGAAGCGGAAGAAGAGAGGAAAGGTGCTGCAAATGCAGTTCGAGGTGGTGAATACATGTATGTTTAA 945 0.4487 MESEDLLKQELEELQKQLGKKQKFESAVSSLKSLLPQTYPSASPSLRKSFYSVICRVATVLKTRYTAPGFWNAGLGLFEQALLLVSEPSEKAHLKACIANAKEHLHLEDNPSQALQPAENQANRGYLFEGHLTVDTEPPQPQWLVQSNLLATAATLFAAESSRGSAANDTTPEDAANVLEDLMNRLEEVVPLMVDEGDFVAPKAPPASKEVVAKLPVVTLTEEILANIGKDAECAICRENLVVNDKMQELPCKHTFHPPCLKPWLDEHNSCPICRYELQTDDHAYESWKEREKEAEEERKGAANAVRGGEYMYV* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2937 314 SUPERFAMILY RING/U-box 228 281 - -
Lja5g2937 314 Coils Coil 7 27 - -
Lja5g2937 314 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 10 308 - -
Lja5g2937 314 Coils Coil 285 305 - -
Lja5g2937 314 ProSiteProfiles Zinc finger RING-type profile. 234 275 IPR001841 -
Lja5g2937 314 SMART ring_2 234 274 IPR001841 -
Lja5g2937 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 281 IPR013083 -
Lja5g2937 314 PANTHER ABI3-INTERACTING PROTEIN 2-1 10 308 - -
Lja5g2937 314 Pfam Ring finger domain 233 275 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2937 Lja-Chr5 57782128 57785069 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2937 7 314 C3H Transcription Factor Family AT5G20910 64.935 5.72e-134 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2937 K16274 - gmx:100798732 518.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2937 5 57782128 57785069 Lja5g2937 5 57782128 57785069 ECH