Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2935 ATGTCAAGGTCTCAGTTTTATCTTTACTATTTCCTTTCTAACTTCTCTTACAAAGGAAAATGGACGGGCTTTGGGAAAACAAGGGATGATGAGTATCAAAACAAACATGGAAGTGGTAATTTTGAAGGTCCATTTGGTGATTATCAAGATGCAGGTGATGACCAACAACAAAATAAGAAGAAGAAATACCACAGACATACTCGTCAACAAACTAAGGAGCTTGAAGCTTTGTTCAATGAGACTCCTCATCCCGACGAGAAGCAAAGATTAGATATCAGTAAGAAGCTAGGCTTGGAGAAAGATAATGTCAAGTTTTGGTTTCAGAACAAGAGAACCCAAATGAAGGAGCAATTGGAACGCCGTGAGAACAAACATCTTAGGCAAGAAAATGAGAAGCTTCGAGTAGAGAACTATGTTATGCATAAAGCTGTGGAAAATCCAACATGCAACAAATATGATGGTATAATCATTTATAAGGGGAACCAACTGATACTTGAGAATTCTAAACTAAATGATCAATTGAATCAAATGCATGTTGGTGGGTCAAGCAATTTTAGCATGCCCTTGTTGCCAATGGGACATGATCTAAGAAATGAAGTTCTGGGCACTCCACTCAATACGCTTTCTGAAATCACACCACCAACGGAATTGGTGAGTAATGAAGCTGAGCTTAAGAGATCTATGTTGTTGAATCTTGCATTAATACCCCTTTGGATCAACAGTTCAGATGGAGGGAAAGAAGTATCAAACCATGACGAGTATGCAAGGACTTTTTCTCCTTATATTGGTCCAAACCCCAATTGTTATGTAACTGAAGCTTCGAGAGAAACCAGGCTAGTACTTTTCAACAGTTTGTCCCTTGTGGAGACATTGATGGACGCAGATCGCTGGTCAGGAATGTTTCCATCTATGGTTGGTAAAGTTGTAATCGTTGAAGTGATATCAAGTGGCATGAATGGATCTATAAGCGGAGCTTTGATAATGATGCAATGTGAGGTTCAATTACCTTCCCCACTTGTCCTAGCTAGGGAATGGAATATCCTGAGGTTTTGCAAGCAACATGCAGAAGGTGTATGGGTTGTTGTTGATGTATCTATTGATAATGAAAGTTCATCAATGAGTTACAAAAGGCTTCCTTCTGGATGTATTGTTCATGACATAACAAATAGTTTGTCCAAGGCAAGATTTCATCACCGCAAAATTATTGCATGCAGATCACATGGGTTGATCATTCCCAATATGATGAGTGTTGTCCACCAACTGTATCACCCTTTAGTTAATTCGGGCATTGGGTTTGGTGCTCAAAGATGGGTTGCAACTCTCCAAAGGCAATGTGAATTCATTGCAATGTTTATGTCCTCTTGTGTTCCATCTGCAGACACCCCGGACATAAGCCAAGGTGGTAGGAGAAGCATGCTGAAGCTCGCACAACGTATGGCCAACTACTTTTTGTCTAGAATTTGTGCTTCATCTTCTTGCAAGTGGGACATCCTTCACATGAGTAACAATGACACAAGGTTTATGTCTCGGAAACATGTTAACAATCTTGGTGAAGATCCTCACAATGTCATCAGCGTCACAACTTCTGTTTCGATGCCAGTGTCGCGGAAAATTTTGTTTGATTTCCTACGCAATCGATATAGAGGTCAATGGAACATTATTTCGAATGATATACCAAAGCAGGAGATTCTTCATTTGAGCAAAGGACAAAAAGAAGGAAATTTGGTTTCCATAATCGGGAATTATAATAATGTTGGTAATGAAAATATTATGAGCAACTTGCTTTGGGTGCAAGACTCTTGGACTGACACCTCTGGGTCTATGATAGTGTATTCCCCCATTACTGTTCAATCTTTCAACATGGTGGTGAATGGTGAAGATTCTGTAGATGTTCATCTCTTGCCTTCAGGCTTTGTTATTCTTCCAGATGGTGCTAGGACTTTACCTGATGGTAGCAACAATAGTAGAGGTGACAGTAACAACGATCGTGGCAAATGCCTGCTTACATTAGGCTTTCACAATGGAGTTAGTTGA 2034 0.3987 MSRSQFYLYYFLSNFSYKGKWTGFGKTRDDEYQNKHGSGNFEGPFGDYQDAGDDQQQNKKKKYHRHTRQQTKELEALFNETPHPDEKQRLDISKKLGLEKDNVKFWFQNKRTQMKEQLERRENKHLRQENEKLRVENYVMHKAVENPTCNKYDGIIIYKGNQLILENSKLNDQLNQMHVGGSSNFSMPLLPMGHDLRNEVLGTPLNTLSEITPPTELVSNEAELKRSMLLNLALIPLWINSSDGGKEVSNHDEYARTFSPYIGPNPNCYVTEASRETRLVLFNSLSLVETLMDADRWSGMFPSMVGKVVIVEVISSGMNGSISGALIMMQCEVQLPSPLVLAREWNILRFCKQHAEGVWVVVDVSIDNESSSMSYKRLPSGCIVHDITNSLSKARFHHRKIIACRSHGLIIPNMMSVVHQLYHPLVNSGIGFGAQRWVATLQRQCEFIAMFMSSCVPSADTPDISQGGRRSMLKLAQRMANYFLSRICASSSCKWDILHMSNNDTRFMSRKHVNNLGEDPHNVISVTTSVSMPVSRKILFDFLRNRYRGQWNIISNDIPKQEILHLSKGQKEGNLVSIIGNYNNVGNENIMSNLLWVQDSWTDTSGSMIVYSPITVQSFNMVVNGEDSVDVHLLPSGFVILPDGARTLPDGSNNSRGDSNNDRGKCLLTLGFHNGVS* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2935 677 SUPERFAMILY Bet v1-like 468 645 - -
Lja5g2935 677 SMART START_1 215 447 IPR002913 GO:0008289
Lja5g2935 677 Gene3D - 28 111 - -
Lja5g2935 677 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 186 673 - -
Lja5g2935 677 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 25 178 IPR042160 -
Lja5g2935 677 SUPERFAMILY Bet v1-like 241 446 - -
Lja5g2935 677 Pfam START domain 224 446 IPR002913 GO:0008289
Lja5g2935 677 Coils Coil 111 136 - -
Lja5g2935 677 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981|GO:0006355
Lja5g2935 677 CDD homeodomain 60 115 IPR001356 GO:0003677
Lja5g2935 677 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 186 673 IPR042160 -
Lja5g2935 677 SUPERFAMILY Homeodomain-like 43 117 IPR009057 -
Lja5g2935 677 SMART HOX_1 59 121 IPR001356 GO:0003677
Lja5g2935 677 CDD START_ArGLABRA2_like 226 446 - -
Lja5g2935 677 MobiDBLite consensus disorder prediction 33 68 - -
Lja5g2935 677 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 25 178 - -
Lja5g2935 677 Pfam Homeodomain 60 115 IPR001356 GO:0003677
Lja5g2935 677 ProSiteProfiles START domain profile. 236 450 IPR002913 GO:0008289
Lja5g2935 677 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2935 Lja-Chr5 57756141 57759449 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2935 27 673 Homeobox Transcription Factor Family AT3G61150 42.090 1.16e-169 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja5g2935 START 1.5e-25 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2935 K09338 - gmx:100794400 627.861