Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2933 ATGGTTTGCGAGATGGAGAGCGATTGTATAGAGGAGATGGACATTGAAGTCCTCTCTTCTATGTGGCCAGAAGATATTGGAACTGATGCTGGAAAACAGTTTAACATAGAAAAGCCTGGAAGGGACCAAGATATGTTGGAGGAGGTAACAATCATAGAGGAGCCAGCTATAGCTGATTTTCAGCGTCTCTTGGAGCTTACTAATTACACAGATAAAGGGTCTTCGCAGTTGGCATACCTCATGCAACACTGGGAGTATAAGCAGGCCAATGCCGTGCGCCTTCTCCGAGAAGAACTTGACAACCTTAGCAAGCAGAGGAAGGAAGTTGAGCTGCGAAAGTTGGAGATACTTAAAGACAACAATCGATTTGAGGAAGAAAATTATGGGGGTGACAAACGTCCGGTTTCTATATTGGATGAAGTTTACTACACATGGCAAGATTTACCGGTACCACTCAGGAAAAGTGTTGTTGCTGTTCAAAACAAGAGGATCGAAATTGATGCTGAGTATGATACTGCTGTGTACTGGAAACAGAAGGCTTTGGATTTCGAAAGACAGTTGGAGGCAAGTGTCCAGAGAGAGCAGACACTTGTGGAGAAGTTGCAAGAAAGTATAGAGACTATCGAGAGGCAGTCCTCGCCGGTGGAAGAACTTACACAGATTCTGAAGAGGGCAGATAATTTCTTACATTTTATACTTCAAAATGCACCTGTCGTTATTGGCCATCAGGACAAAGAGTTGCGCTATCGCTTTATCTATAATCATTTTCCAAGTTTACAAGAGGAGGACATCATAGGGAAAACAGATGTTGAAATTTTCACGGGATCTGGTGTTAAGGAATCTCAAGATTTTAAGAGAGAAGTAATGGAGAAAGGATTACCTGCAAAAAAGGAAATCACTTTTGAGACAGAACTGTTTGGGTCAAAGACATTCTTGATATATGTAGAACCAGTCTTTAGTAAATCAGGGGAGACAATTGGAGTAAATTATATGGGAATGGAAATAACAGATCAGGTGAGAAAAAGAGAAAGAATGGCAAAGCTAAGGGAAGAGATTGCAGTTCAGAAAGCCAAGGAAACCGAACTTAATAAAACCATTCACATTACAGAGGAGACTATGAGAGCAAAACAAATGCTGGCAACAATGTCTCATGAGATAAGATCTCCACTGTCTGGAGTTGTTAGCATGGCTGAAATTCTTTCTACCACGAAACTTGATCGGGAGCAAAAACAGCTCTTGAACGTCATGATGTCTTCTGGAGATTTAGTTCTTCAACTTATAAATGACATACTTGATCTTTCCAAGGTTGAGTCAGGAGCTATGAAATTGGAAGCTACCAAATTCCGGCCAAGAGAGGTAGTAAAGCATGTACTCCAGACAGCGGCAGCATCATTGCAAAAAATGCTAATCTTAGAAGGAAATGTCGAAGATGATATACCTATAGAGGTCACTGGAGATGTTTTACGGATTCGACAGATTCTCACAAATTTAGTAAGCAACGCCGTCAAGTTTACACATCAAGGAAAAGTTGGTATAAACCTTTATGTTGTTCCAGAACCACCTTTTGCCAAAGTAGAAGGTCACCAAAAGATGACCGCAGACCAATCAACTATTTCAGCAAATGGCGTGAAGGAAGAGAAGCATCTATCAACGCCTCGAAGTAGATGCGATCAAAACCTTGATGGTATAAAACAAAATGACCATTACACTCAAGATCATGCCTTCAATGATGAATGTAGATCATCAGTTAATAGTGAATGTTCAATGAATGGAGATACTGAGGAGCGAACTCATTCAACAGAAACAACAGTGTGGATACGTTGTGATGTATATGACACAGGAATTGGAATACCAGAGAAGGCTCTGCCTAATTTATTTAGAAGGTACATGCAAGTCAGCGCAGACCATGCTCGAAAATATGGGGGCACAGGGCTAGGACTAGCAATATGCAAACAACTGGTTGAGTTAATGGGTGGTCGTCTAACAGTATCTAGCAAAGAACATTGTGGTTCTACCTTCACCTTTATACTTCCGTACAAGGTTTCAACCGCTTGTGAAAACTCTGATGACCCAGATGACCTTTCAGATGTGGAAAATAGTGAAGATGATACAACAGAGGGCTTCTTCCAATTTCAACCTCGCACTTTGGGCTCTCTTTTCACTTCTAATGGATCTAGCAGGCCCAAAAATATATTACCAGGCTACAGGAGCTCGAATAAGTTCAATGGGTTTTCAGATAACTCTGACTCACTCCACTCTAGTAACATATCAAAAGGGACTAGTACATTTGAAGATGCATCTTCAGTTGTTGTTGATGCTCCAGAGATGTCTGACACTACAAGTTCATCAAGTCAAAGCCCAGAAACAAAGCATGAAAGCTTAGTTAATGGAAACAAACAGAACAATGACACTGCACATGCTCGGTTACAGAATGGTAGTGCAGACTCTTGTCAACTTAAGGAGACAGATAGAGAAATGAGTGTAGCAACATGTCAGAGTCCAGGGAAGGCAGACATAACTTCCCAATATGTTAGTAGCAGAAACAGCATTTCATCAGAAGTAACGATGTCCGCATTAAAGCCGAAGATTCTTCTCGTGGAAGATAACAAAATCAATATCATGGTGACGCAGTCAATGGTGAAGCGGTTAGGATATAGCATGGATGTTGTGAATAATGGAGTGGAAGCCATACGGGCAGTTCAGCACCATACGTATGATATCATTCTAATGGATGTTTTCATGCCAGTTATGAATGGTCTTCAGACAACAAAACTGATTCGATCATATGAGGAAACGGGCCATTGGGATGCTGCAAGAAAAGCTGGAATTGAACAAAGTTTATCTGCATCGGATGAATGTCCTGTCCCACCTAATAAACGGATGCACATTGTTGCGATGACAGCAAACACATTGGCTGAGAGTGCTGAAGAATGTTTTGCAAATGGTATGGACTCATTTGTGTCAAAACCTGTGACTTTCCAAAAACTGAAAGATTGTCTGGAAAAGCACCTAAGGTGA 3018 0.4109 MVCEMESDCIEEMDIEVLSSMWPEDIGTDAGKQFNIEKPGRDQDMLEEVTIIEEPAIADFQRLLELTNYTDKGSSQLAYLMQHWEYKQANAVRLLREELDNLSKQRKEVELRKLEILKDNNRFEEENYGGDKRPVSILDEVYYTWQDLPVPLRKSVVAVQNKRIEIDAEYDTAVYWKQKALDFERQLEASVQREQTLVEKLQESIETIERQSSPVEELTQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGSGVKESQDFKREVMEKGLPAKKEITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMEITDQVRKRERMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQKQLLNVMMSSGDLVLQLINDILDLSKVESGAMKLEATKFRPREVVKHVLQTAAASLQKMLILEGNVEDDIPIEVTGDVLRIRQILTNLVSNAVKFTHQGKVGINLYVVPEPPFAKVEGHQKMTADQSTISANGVKEEKHLSTPRSRCDQNLDGIKQNDHYTQDHAFNDECRSSVNSECSMNGDTEERTHSTETTVWIRCDVYDTGIGIPEKALPNLFRRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVSSKEHCGSTFTFILPYKVSTACENSDDPDDLSDVENSEDDTTEGFFQFQPRTLGSLFTSNGSSRPKNILPGYRSSNKFNGFSDNSDSLHSSNISKGTSTFEDASSVVVDAPEMSDTTSSSSQSPETKHESLVNGNKQNNDTAHARLQNGSADSCQLKETDREMSVATCQSPGKADITSQYVSSRNSISSEVTMSALKPKILLVEDNKINIMVTQSMVKRLGYSMDVVNNGVEAIRAVQHHTYDIILMDVFMPVMNGLQTTKLIRSYEETGHWDAARKAGIEQSLSASDECPVPPNKRMHIVAMTANTLAESAEECFANGMDSFVSKPVTFQKLKDCLEKHLR* 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2933 1005 Gene3D - 440 685 IPR036890 -
Lja5g2933 1005 SMART REC_2 861 1000 IPR001789 GO:0000160
Lja5g2933 1005 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 5 1003 - -
Lja5g2933 1005 MobiDBLite consensus disorder prediction 689 703 - -
Lja5g2933 1005 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 373 439 IPR036097 GO:0000155|GO:0007165
Lja5g2933 1005 SMART HKATPase_4 485 681 IPR003594 -
Lja5g2933 1005 CDD REC_hyHK_CKI1_RcsC-like 863 1000 - -
Lja5g2933 1005 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 5 1003 - -
Lja5g2933 1005 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 469 678 IPR036890 -
Lja5g2933 1005 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 485 679 IPR003594 -
Lja5g2933 1005 ProSiteProfiles Histidine kinase domain profile. 381 681 IPR005467 -
Lja5g2933 1005 Coils Coil 345 365 - -
Lja5g2933 1005 Pfam Response regulator receiver domain 863 930 IPR001789 GO:0000160
Lja5g2933 1005 Coils Coil 184 211 - -
Lja5g2933 1005 MobiDBLite consensus disorder prediction 746 817 - -
Lja5g2933 1005 CDD HATPase_EvgS-ArcB-TorS-like 490 678 - -
Lja5g2933 1005 SMART HisKA_10 374 439 IPR003661 GO:0000155|GO:0007165
Lja5g2933 1005 PRINTS Bacterial sensor protein C-terminal signature 606 620 IPR004358 GO:0016310|GO:0016772
Lja5g2933 1005 PRINTS Bacterial sensor protein C-terminal signature 641 659 IPR004358 GO:0016310|GO:0016772
Lja5g2933 1005 PRINTS Bacterial sensor protein C-terminal signature 665 678 IPR004358 GO:0016310|GO:0016772
Lja5g2933 1005 MobiDBLite consensus disorder prediction 687 708 - -
Lja5g2933 1005 Pfam His Kinase A (phospho-acceptor) domain 376 439 IPR003661 GO:0000155|GO:0007165
Lja5g2933 1005 ProSiteProfiles Response regulatory domain profile. 862 1004 IPR001789 GO:0000160
Lja5g2933 1005 Coils Coil 92 127 - -
Lja5g2933 1005 CDD HisKA 373 435 IPR003661 GO:0000155|GO:0007165
Lja5g2933 1005 Gene3D PAS domain 215 351 - -
Lja5g2933 1005 Gene3D - 855 1005 - -
Lja5g2933 1005 Gene3D - 362 439 - -
Lja5g2933 1005 SUPERFAMILY CheY-like 861 1005 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2933 Lja-Chr5 57697791 57705570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2933 1 1004 Histidine Kinase Gene Family AT5G10720 56.960 0.0 1084
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja5g2933 HATPase_c 2.2e-27 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2933 - - gmx:100796072 1696.02