Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2931 ATGGCCATCACAACCACGACTAAGATGTGCGATTCTTGCAAATCCTCACCTGCCACCCTGTTCTGCCGCGCTGACTCAGCCTTCCTCTGCTTCCCCTGCGACTCCACCATCCACGCCGCCAACAAGCTCGCCTCCCGCCACCCTCGCGTCCCTCTCTGCGAGGTCTGCGAGCAAGCCCCCGCCTCCGTCACCTGCAAGGCTGACGCCGCTTCCCTCTGCGTCTCCTGTGACCACGACATCCACTCCGCCAACCCCCTCGCCCGCCGCCACGAACGCGTCCCCATCGCGCCGTTCCACCACCACAACCACAACACCACCTACCTCTCCGACGCCGATGCTGCTGACGTCACCACCGATGAAGCTGAAGCCGCTTCCTGGCTACTTCCTACCCCTTCCAACCCCAAAGGCCCCGATCTCAACTCCTCTCACTACTCCTACTCCGAAATCGACACCGTCGAGCTCGATTTCACCAAAATTGACTCGCCAGAGCATAACAGCGCCGCCACCGCCGACGGAGTCGTTCCGGTGCAATCACAGAGCAAGATCACTACAATCGAGCACCACTACGACAACGACGCTAACAACCAAATCGATTTCCCTACCTCTAAGCCTTTCGCTCACAACTACAACGCTAAATCGCACTACCACGCTGTGTCGTCGCCGTCGATGGAGGTTGGTGTTGTGCCGGATGGGAACGCGATGTCGGAGATTTCGTACTGTTGCTATGGAACGCCGGCGCCGGCGGTGGAGGCGGTGCAATTCTCGGCGGCGGATAGGGAAGCTAGGGTTTTGAGGTACAGAGAGAAGAGGAAGAATCGAAGGTTCGAGAAGACCATTCGCTACGCTTCGAGGAAAGCTTATGCGGAAACTAGGCCCAGGATCAAAGGAAGGTTCGCGAAACGCTCCGATGTGAATGTGAATCTTCTCACGGAGGAGGACCCTTTCTCTGGATACGGCGTCGTTCCCACATGCTGA 975 0.5836 MAITTTTKMCDSCKSSPATLFCRADSAFLCFPCDSTIHAANKLASRHPRVPLCEVCEQAPASVTCKADAASLCVSCDHDIHSANPLARRHERVPIAPFHHHNHNTTYLSDADAADVTTDEAEAASWLLPTPSNPKGPDLNSSHYSYSEIDTVELDFTKIDSPEHNSAATADGVVPVQSQSKITTIEHHYDNDANNQIDFPTSKPFAHNYNAKSHYHAVSSPSMEVGVVPDGNAMSEISYCCYGTPAPAVEAVQFSAADREARVLRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRSDVNVNLLTEEDPFSGYGVVPTC* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2931 324 CDD Bbox1_BBX-like 10 52 - -
Lja5g2931 324 Pfam B-box zinc finger 8 52 IPR000315 GO:0008270
Lja5g2931 324 Pfam B-box zinc finger 50 95 IPR000315 GO:0008270
Lja5g2931 324 ProSiteProfiles CCT domain profile. 259 301 IPR010402 GO:0005515
Lja5g2931 324 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 5 323 IPR045281 GO:0009909
Lja5g2931 324 Pfam CCT motif 259 301 IPR010402 GO:0005515
Lja5g2931 324 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 5 323 - -
Lja5g2931 324 ProSiteProfiles Zinc finger B-box type profile. 48 95 IPR000315 GO:0008270
Lja5g2931 324 SMART bboxneu5 53 95 IPR000315 GO:0008270
Lja5g2931 324 SMART bboxneu5 5 52 IPR000315 GO:0008270
Lja5g2931 324 ProSiteProfiles Zinc finger B-box type profile. 5 52 IPR000315 GO:0008270
Lja5g2931 324 CDD Bbox1_BBX-like 52 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2931 Lja-Chr5 57679541 57681114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2931 7 323 C2C2-CO-like Transcription Factor Family AT5G24930 50.820 7.68e-95 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lja5g2931 zf-B_box 7.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2931 - - lja:Lj5g3v0473570.2 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2931 5 57679541 57681114 Lja5g2931 5 57679541 57681114 ECH