Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2930 ATGATAACTTGGAACCTTTTGCACGCAAGAATAAGCTTTACACACACAATCCTGCTATTATTTTTCCTTCATTTTTTCGTGCTGGGCAAGGAAATTGTATCTGGGTACCCTGAATATTCAAGCTTTGATATGGGTTACCTCAACTCAGTTTTGTCCTCTTCAAGCCAGGTTCATGCTGCTGAAGATTCACCCGTTAGCGGTGGAGGCCTCAGTCAGAATGGCAAATTCAGCTATGGGTATGCTAGCTCCCCTGGCAAGAGATCCTCAATGGAAGATTTTTATGAGACAAGAATTGATGGTGTTGAGGGTGAAGTTGTTGGCCTTTTTGGAGTTTTTGATGGTCACGGTGGTGCTCGTGCTGCTGAGTATGTCAAGCAAAACCTATTTAGTAATTTGATCAGTCACCCAAAGTTTATTTCTGACACCAAATCTGCAATAGCTGATGCGTATAACCATACGGACTCTGAATTTCTGAAGTCAGAAAATAATCAAAACAGAGATGCTGGATCAACTGCTTCCACTGCCATTCTTGTTGGTGACCGTTTGCTTGTTGCAAATGTTGGAGACTCCAGAGCTGTTATATGCAGGGGCGGAAATGCCATTGCCGTCTCTCGAGATCACAAACCAGATCAAACTGATGAGAGGCAAAGGATAGAAGATGCTGGGGGCTTTGTTATGTGGGCTGGAACTTGGAGAGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGTGATAGACTCCTGAAACAGTATGTTGTTGCTGATCCAGAAATTCAGGAAGAAAAAGTGGACGGATCTCTTGAGTTTCTTATTTTGGCCAGTGATGGGCTATGGGATGTTGTCTCAAATGAGGAAGCTGTGGCTATGATTAAACCAATTGAGGATGCCGAGGAGGCAGCAAAGAGGCTGATGCAAGAAGCATATCAGAGAGGTAGTTCTGACAACATTACTTGTGTTGTTGTTCGCTTCGTGGTGAACCAAGGCGCTTCATCTCGCAGTACCTCTAGCTAA 1011 0.4411 MITWNLLHARISFTHTILLLFFLHFFVLGKEIVSGYPEYSSFDMGYLNSVLSSSSQVHAAEDSPVSGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEVVGLFGVFDGHGGARAAEYVKQNLFSNLISHPKFISDTKSAIADAYNHTDSEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKVDGSLEFLILASDGLWDVVSNEEAVAMIKPIEDAEEAAKRLMQEAYQRGSSDNITCVVVRFVVNQGASSRSTSS* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2930 336 Gene3D - 69 328 IPR036457 -
Lja5g2930 336 PANTHER PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE TYPE 2C 46 332 - -
Lja5g2930 336 SMART PP2C_SIG_2 88 323 IPR001932 -
Lja5g2930 336 Pfam Protein phosphatase 2C 105 316 IPR001932 -
Lja5g2930 336 SMART PP2C_4 67 321 IPR001932 -
Lja5g2930 336 ProSitePatterns PPM-type phosphatase domain signature. 108 116 IPR000222 GO:0043169
Lja5g2930 336 PANTHER ALPHABET, ISOFORM E-RELATED 46 332 - -
Lja5g2930 336 ProSiteProfiles PPM-type phosphatase domain profile. 77 323 IPR001932 -
Lja5g2930 336 CDD PP2Cc 76 323 IPR001932 -
Lja5g2930 336 SUPERFAMILY PP2C-like 71 323 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2930 Lja-Chr5 57638129 57643913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2930 44 336 PP2C-type Phosphatase Gene Family AT4G31750 90.444 0.0 538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2930 K17506 - gmx:100795017 602.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2930 5 57638129 57643913 Lja5g2930 5 57638129 57643913 ECH