Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2923 ATGGAGGAGATGAAGGAGGACATCCTATTCGGGAAGTACGAGATGGGAAGGGTTTTAGGCAAAGGAACGTTTGCGAAGGTGTACTTCGCGAAGGAAATCACCTCAGGTGAAGGCGTTGCGATCAAAGTCATGAGCAAAGCCCGTATAAAGAAAGAAGGCATGATGGATCAAATCAAACGTGAGATTTCCATAATGCGTTTGGTTAGACACCCAAACATCGTGAACCTCAAGGAAGTCATGGCCACTAAAACCAAAATCTTCTTCATCATGGAGTACATACGTGGCGGCGAGCTATTCGCCAAGGTGGCAAAGGGGAAATTGAAAGAAGATCTCGCCCGTAGATACTTCCAGCAGTTAATCAGCGCCGTCGATTACTGCCACAGCAGAGGTGTGTCCCACCGTGATCTGAAGCCAGAGAATCTACTTCTTGATGAGAATGAAAATCTGAAGGTGTCAGATTTTGGTCTATCCGCCCTGCCGGAACAACTCCGGCAGGACGGGCTACTCCACACCCAGTGTGGAACTCCGGCGTACGTCGCGCCGGAGGTCCTAAGGAAAAAAGGATATGATGGATTCAAAACTGATACCTGGTCTTGTGGTGTTATTCTCTATGCTCTTCTTGCAGGGTGTCTTCCTTTCCAGCATGAGAATCTCATGACCATGTACAACAAGGTTCTCAGAGCAGAGTTTCAGTTTCCGCCATGGTTTTCCCCTGAATCGAAGAAGCTAATCTCGAAGATCCTCGTCGCGGATCCGAATCGACGAATCACGATCTCTTCAATCATGCGCGTCTCGTGGTTCCAGAAAGGATTCTCAGCCTCAATTCCAATTCCAGATCCCGATGAGTCCAATTTCAATTCCGATTTGAATTCCAGTTCTGAACAATCGACCAAGGTTGTGGCTGCTGCGAAATTCATCAACGCGTTCGAGTTCATTTCATCGATGTCTTCTGGTTTCGATCTCTCAGGGTTTTTCGAGGAGAAGAGGAGAGGCGGTTCGGTGTTCACGTCCAAGTGTTCGGTTTCGGAGATCGCGTCGAAGATCGAAGGCGCGGCGAAGGGGTTGAGGTTTCGGGTGGCGAAGGTTAAGGATTTCAAGCTGAGACTGCAGGGGATGACGGAGGGGAGGAAGGGGAAGCTGGCCGTGACGGCGGAGATTTTAACGGTGGCGCCGGAGCTTGCGGTGGTGGAGTTTTCGAAGTCCGCCGGCGATACCCTGGAATATGTCAAGTTTTGCGAGGAGGATGTGAGGCCAGCGCTGAAAGACATTGTTTGGACGTGGCAGGGTGAGTAA 1293 0.5012 MEEMKEDILFGKYEMGRVLGKGTFAKVYFAKEITSGEGVAIKVMSKARIKKEGMMDQIKREISIMRLVRHPNIVNLKEVMATKTKIFFIMEYIRGGELFAKVAKGKLKEDLARRYFQQLISAVDYCHSRGVSHRDLKPENLLLDENENLKVSDFGLSALPEQLRQDGLLHTQCGTPAYVAPEVLRKKGYDGFKTDTWSCGVILYALLAGCLPFQHENLMTMYNKVLRAEFQFPPWFSPESKKLISKILVADPNRRITISSIMRVSWFQKGFSASIPIPDPDESNFNSDLNSSSEQSTKVVAAAKFINAFEFISSMSSGFDLSGFFEEKRRGGSVFTSKCSVSEIASKIEGAAKGLRFRVAKVKDFKLRLQGMTEGRKGKLAVTAEILTVAPELAVVEFSKSAGDTLEYVKFCEEDVRPALKDIVWTWQGE* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2923 430 ProSitePatterns Protein kinases ATP-binding region signature. 19 51 IPR017441 GO:0005524
Lja5g2923 430 CDD STKc_SnRK3 12 266 - -
Lja5g2923 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Lja5g2923 430 Gene3D Transferase(Phosphotransferase) domain 1 94 273 - -
Lja5g2923 430 CDD CIPK_C 307 421 - -
Lja5g2923 430 Gene3D Phosphorylase Kinase; domain 1 4 92 - -
Lja5g2923 430 Pfam Protein kinase domain 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2923 430 Pfam NAF domain 304 361 IPR004041 GO:0007165
Lja5g2923 430 SMART serkin_6 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2923 430 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 25-RELATED 1 430 - -
Lja5g2923 430 PANTHER - 1 430 - -
Lja5g2923 430 ProSiteProfiles Protein kinase domain profile. 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2923 430 SUPERFAMILY Protein kinase-like (PK-like) 9 286 IPR011009 -
Lja5g2923 430 ProSiteProfiles NAF domain profile. 301 326 IPR018451 GO:0007165
Lja5g2923 430 Gene3D Kinase associated domain 1, KA1 301 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2923 Lja-Chr5 57546071 57548199 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2923 1 430 CBL-interacting serine-threonine protein kinases AT5G10930 66.895 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lja5g2923 Pkinase 4.3e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2923 - - gmx:100780478 649.818