Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2922 ATGGAATCAACATGCATAGATACTTCACTCAATCTTAACGTTGTTCCTTCTCTGAACATGGATGAGTTTTTGGTTGAAGAGTTGCATCGTCTAAGTTGTGAGAATAAGAGGCTGAGTGAGAGTCTGACCCACATGTGGGAGAACTATGAGGCTATGCAAAATCAGTTGAGCCAATTGGTGAACAAAAAAATTGAACACCAAACACAACAATCACGGAAGAGAAAAGCTGAGTTTGAAAGTTGCATCAATAATACTGAGTGCAGCACCAATATTACAGAGGAGGAGTCAGTAATCAAAAGGACCAGTGATACCATGAATATGATCACCTTGCCCAAGGTTTCCAAGGTTCTTGTGAAGACAGAAGCATCTAATACTAGCTTATACGTGATGGATGGATATCAATGGAGGAAGTATGGTCAGAAAGTCACAAGAGATAACCCCTCACCTAGAGCCTACTTCAAATGCTCCTATGCCCCAAGCTGCCCAGTGAAGAAAAAGGTGCAGAAAAGCTTAGATGACCCTACCATACTGGTTGCAACGTATGAAGGAGAGCACAACCATGGTCATCAGCAGCTAGCTAAAATTCCATTGGTGTCAAGGCAAAGTGAAGAAGGCCCTATGGGGTCAGTTCATGTTTCCTCACCTACATCCATTATTGACAAGGTCGACAATGTTCAAAAGTCATCATCTATTCGGCAGTTTCTGGTTCAACAAATGGCTACTTCTTTGACAAGGGATCCCAATTTCACAGCAGCACTTGCCACTGCCATTTCAGGGAGAATTCTTGACCAGACTTCTATGCCCAAATGGTGA 813 0.4268 MESTCIDTSLNLNVVPSLNMDEFLVEELHRLSCENKRLSESLTHMWENYEAMQNQLSQLVNKKIEHQTQQSRKRKAEFESCINNTECSTNITEEESVIKRTSDTMNMITLPKVSKVLVKTEASNTSLYVMDGYQWRKYGQKVTRDNPSPRAYFKCSYAPSCPVKKKVQKSLDDPTILVATYEGEHNHGHQQLAKIPLVSRQSEEGPMGSVHVSSPTSIIDKVDNVQKSSSIRQFLVQQMATSLTRDPNFTAALATAISGRILDQTSMPKW* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2922 270 ProSiteProfiles WRKY domain profile. 131 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja5g2922 270 Coils Coil 49 69 - -
Lja5g2922 270 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 12 264 IPR044810 GO:0003700
Lja5g2922 270 Gene3D WRKY domain 112 189 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja5g2922 270 SMART WRKY_cls 129 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja5g2922 270 Pfam WRKY DNA -binding domain 131 187 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja5g2922 270 PANTHER WRKY FAMILY TRANSCRIPTION FACTOR-RELATED 12 264 - -
Lja5g2922 270 SUPERFAMILY WRKY DNA-binding domain 127 189 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2922 Lja-Chr5 57495609 57497059 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2922 3 264 WRKY Transcription Factor Family AT1G80840 46.512 7.37e-71 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja5g2922 WRKY 1.7e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2922 - - lja:Lj0g3v0242439.1 330.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2922 5 57495609 57497059 Lja1g3935 1 49897113 49899359 PCT