Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2920 ATGGCATTGTTCCGCAAGTTCTTCTATAAGAAGCCCCCTGATGGGCTTCTAGAAATTACTGAAAGGGTTTATGTCTTTGATTACTGCTTTACCACGGATGTTATGGACGAAGATGAATACAAAGTGTATATAGGGGGTATAATTAGGCAACTTCGTGATCACTTCCCTGATGCTTCATTAATGGTGTTCAACATGCGGGAGGGAGAAAACCAAAGCCAGATATCAAACATTTTGTGCGACTATGATATGACTGTGATGGACTATCCTCGACAATATGAAGGTTGCCCGTTACTTACCATGGAGATGATCCACCATTTCTTGAGATCAGGAGAAAGTTGGCTTCAACTTGGGCAGCAAAACATTGTCTTGATGCATTGTGAACGAGGCGGGTGGCCAGTTTTAGCATTTATGCTAGCTGCATTCTTGATATACAGAAAGCTATTTACTGGAGAGCAGAAAACACTTGACATGATATACAAGCAAGCTCCTCGGGAACTTTTGCAGTTGATGTCGCCGTTGAATCCATTACCTTCACAATTTAGGTATCTACAGTACATATCAAGAAGAAATGTTGGTTCAGAATGGCCTCCTCTTGATAGAGCACTTACATTGGACTGCGTGATTATAAGACTCATTCCTAATATGGATGGAAATGGGGGCTGCCGTCCTATATTTAGAATATATGGACAGGACCCTTTTATTCCTGCTGATAGGACTCCCAAAGTTCTCTTTTCAACTCCAAAAAGGAGCAAACTTGTTCGGCATTACAAGCAGGATGAATGTGAACTGGTTAAGATTGACATCCATTGTCATGTTCAAGGAGATGTTGTTCTGGAGTGTATTAGTTTGGACAGTGATTTGGAACGTGAACAAATGATGTTTCGGGTGATGTTCAATACGGCATTCATAAGATCAAATATTTTGATGCTTAACCGTGATGAAATTGATATGTTATGGAATGCTAAAGATCAGTTCCCTAAAAACTTTAGAGTAGAGGTTCTTTTCTCAGAAATGGAAGCTTCATCTTCTGTTATTTCAATCGACCTGCCTCGTATTGAGGAGAAAGAAGGCCTACCTGTTGAAGCATTTGCTAAGGTTAAGGAAATTTTCAGCAACGTTGACTGGCTAGATTCGAAGACAGAGGTAGCAAGTATGCTCCAACAGATCACGGCGTCCAATATCCTCCTTGAAAAATTGGACAGTGGGGTTTCTTCTCCAACAAGTAGCTTGCTAAAGGAGTCATTGTCTGGAAGATTTAAATTTGATTCAAAGACACAGAATGATACGATGAATCTGCCTTCTGCGATTCAGAAGAATCTTTCTGAGTCCTCATTGGAATTATCTAGGGATGCCCCTATGGAAAAGAAGATACAACCATTAGAATCAAAGGCATTGTCAGAAAACGACAACAAGACTCTTGCATCTCTAAGTCAGGGGGATCAACCTATTCCTACATCTGGGCTCTCAAGAGATTCGGGTTCTGCTAAAAAGGAGAATGAATCATTAGAATCAAAACAATCATTTGAAAATGATACCAAATTTCCTACTTCAATGGTTCAGGAGAAACAATCTATCCCCTTAATTGAACCATCTATAGATCCAAATTCAGTGAAAAAGAAGATTGGATCACTGGAATATGAGGAAAAGGATATTGTACCACTAGCATCAAAGGCAATGTTGGAAAATGACACCGTGTTTCCTGCTTCTGAGTCTCAGGGAAAACAATCTACTCACTTACTTGAGCAATCCAACAATGCAAGTTCAATTAAAAATAAGATTGGACAGTTAGGATCAAAGGAAACAGAGATTGGATCATTAGGCTCGGAGGCATTGTTGCAAAGTGATAAAGAACTCAACTCTGAACTGAAGACACTTCCTGAAATTGATGTTGGAAGTCCAATTTCTGCAGTTCAGAGTAAGCTCCCTCAGTTCTCAATTGAATCCTCTAGGGATGCTACAAAGGAAAAGAATAAAGAACCTTCAGAATCAAAGGCTTCACCAGAAAATAATATCAAGACTCTTGCACCCACGGGTCAGGGTAAACAACATATCCCCACATCTGGACTCTCAACAGATTCAAATTCTTCCAAAATGCAGATTGAATCATTAGAATCAAAGACATCGGTGGAAAATGATACCAAGTGTCCTCCATCTATTGCTCAGGAGAAACAGTCTATACCCTTAATTCAACCATCCACGGATGTAAATTCAATGAAAAAAATGAATGGACAATCAGAATCAGTGGTGTTGTCAGAAAGTGATACCAAGAGGCCCACACCCACAGTTCAGAGGAAACAAAATAGTCCCTTACTTGAATCGTCCACTGATGCAATTAAAAAGAAGTTTGAACCTAAAGAATTACAGGTTTCTCTTAAGCTCCCCACCCAATCTAAAATAATTTCTCCACGGCTGCATCAAGCTAATAGATCTGCTCCTGCTTCTTATTCTAACTCCTTGCAAGGGTCACCTGTTGCTATCTCAAGATATCATAGTGCACCATCAGCTCTTGGAATTACATCTGTGTTGCAGGATCATACACCGACCGATATTAAAGAAGTCACTCATGCAATGACAGTATCTCCAGCTTCGACTTTGCCTCCCTCAGACTCAAAAGAGTCAAAATCTATAGAGCCTAGTTCCACAAGTGTTTGCCCAGCTTCATCACCAGCACTTCTTCCATCTTTACCAGTAAAATCTTCAGGGGATGCTCTTGCTTCAGTGGAGAAGACTTTTAAACCCCTTGCTTCTGCTCCTCCTTCTAAATGTGAGCCTAATTCAGAATTGGCACAATCTGTTGTTACAAAGCACTCCGAAAATAAAATGGATGATAACGGTCAGAAATCATTGGTCATGCCTCCTCCTCTTCCTCCACCAGCCCTTCCTTTTGATGCTATCCAAAGCTCTCTTTCAATGCCTACTCCTCCAACCCCAGCACTTTCTTCTCCATCTTCTGCCATGAAGAGCTCACATTTATCCCATCCACCACCCTCTCCCCTTCCGGAAACATCTCCTTCCACTGGCAAAGATACATTTAAAGGCCCTCCTACCCCACCACCTCCACCTCCTCCATCCTTTAGTGGACAGAATTCATCTTTAACACCTCCTCTTCCTCCATATCCTACAGGACAAACTTCATCATCTTCAATACCTCTTCCTCCTCCTTCTCCATCTTCTACAAGGCAGACTTCATCATCTTCAATACCTCCCCCTCCTCCTCCTGCTCCATCTTCTACAGGGAAGACTTCATCATCTTCAATACCTCCTCCTCCTCCTCCTTCTATGTCTGGCCCTCCTCCCCCACCTCCACCTCCTAGACATTCGGGCACAACACCTGGTTCTACTCCTACATCAATAGTGTCACCACCACCACCACCTCCTCCTCCTGCTTCTGCATCCCAAAACTCTCTGTCTAGGAACCCGACAAATCCTCCGCCTGTGCCCCCGCCTCCTGCCGCACCTGCGAACGGATTATCAAAATCTGGCGCACCCCCACTGCAGCTTCATACTGGTGCTGGAAATGGAAATGTGCCTCCGATTCCTGGACCACCTTCTGGTGCTCTCTTTGGTGCAAAGGGACGTGGCTTGTTGCGACCTAATCCAAAAATTCAGACTCAAACTAAAAGGAACAATCTGAAACCTTATCATTGGTTAAAATTAACAAGGGCCATGCAAGGTAGCTTATGGGCTGAGACACAGAAACTTGATGAAGCTTCTAGGGCTCCAGAGTTTGACATGTCAGAACTTGAGACATATTTCGCTGCAGTTGCTCCAAATTCTGAGAAAGGAGGAAAATCAAATCGCCGTGTCTCTGGGCAAAAAGCTGACAAAGTTCAATTGATTGAGCTCAGGCGGGCGTATAACTGTGAGATCATGCTCACAAAAGTCAAAATCCCGTTGCCTGATTTAATGAGTGCTGTGCTTGCACTGGACGATTCAATATTACAGGTTGATCAAGTTGAGAACCTCATAAAGTTCTGTCCAACCAAAGAAGAGATAGAAATGCTCAAGAACTATAAAGGAGATACGGACAACTTGGGAAAGTGTGAACAGTTCTTCTTAGAATTAATGAAAGTGCCAAGAGTGGAAAACAAGCTAAGGGTTTTCTCTTTTAAGATGCAATTCTGCACCCAGGTTGCAGATCTCAGAAGGGACCTGAGTATTGTAAATTCTACATCTGAAGAGATCAGGAACTCAGTCAAGTTGAAAAGAATCATGCAGACCATTCTTTCACTGGGTAATGCTTTGAATCATGGAACTGCAAGAGGTTCTGCTGTTGGGTTCCGGTTGGATAGTCTCCTTAAACTCACTGATACACGTGCCCGAAACAACAAGATGACTCTCATGCATTATCTTTGTAAGGTTCTTGCTGATAAGCTTCCAGAACTTTTAGACTTCCCCAAAGACCTAGTGAGTTTGGAGGCTTCAACAAAGATACAATTGAAATATTTGGCAGAGGAAATGACAGCAATTGATAAAGGACTAGAGAAAGTAGTTCAGGAATTGACTGCCTCAGAGAATGACGGGCCTGTGTCAGATAACTTCTGCCAGATTCTGAAGGAATTCCTTCACGATGCCGAAGCTGAAGTGAGATGTTTGGCTCAACTTTATGCCAATGTGGGTAGAAATGCAGATGCGTTGACTCTATACTTCGGAGAAGATCCGGCACGTTGCCCATTTGAGCAGGTTGTATCGACATTACTCAACTTTGTGAGGATGTTCGTCCGAGCACACGATGAAAACTTCAAGCAGATTGAATATGAAAAAAAGAAAGCAGAGAAGGAAGCAGCAGAAAAAGAGAAGTTGAAGCTAGGTTCTAAGGAGTCTGAACATTTGATAAGGACTCCCATCAAGAGTAGGAGCATTAAGTAG 4869 0.4237 MALFRKFFYKKPPDGLLEITERVYVFDYCFTTDVMDEDEYKVYIGGIIRQLRDHFPDASLMVFNMREGENQSQISNILCDYDMTVMDYPRQYEGCPLLTMEMIHHFLRSGESWLQLGQQNIVLMHCERGGWPVLAFMLAAFLIYRKLFTGEQKTLDMIYKQAPRELLQLMSPLNPLPSQFRYLQYISRRNVGSEWPPLDRALTLDCVIIRLIPNMDGNGGCRPIFRIYGQDPFIPADRTPKVLFSTPKRSKLVRHYKQDECELVKIDIHCHVQGDVVLECISLDSDLEREQMMFRVMFNTAFIRSNILMLNRDEIDMLWNAKDQFPKNFRVEVLFSEMEASSSVISIDLPRIEEKEGLPVEAFAKVKEIFSNVDWLDSKTEVASMLQQITASNILLEKLDSGVSSPTSSLLKESLSGRFKFDSKTQNDTMNLPSAIQKNLSESSLELSRDAPMEKKIQPLESKALSENDNKTLASLSQGDQPIPTSGLSRDSGSAKKENESLESKQSFENDTKFPTSMVQEKQSIPLIEPSIDPNSVKKKIGSLEYEEKDIVPLASKAMLENDTVFPASESQGKQSTHLLEQSNNASSIKNKIGQLGSKETEIGSLGSEALLQSDKELNSELKTLPEIDVGSPISAVQSKLPQFSIESSRDATKEKNKEPSESKASPENNIKTLAPTGQGKQHIPTSGLSTDSNSSKMQIESLESKTSVENDTKCPPSIAQEKQSIPLIQPSTDVNSMKKMNGQSESVVLSESDTKRPTPTVQRKQNSPLLESSTDAIKKKFEPKELQVSLKLPTQSKIISPRLHQANRSAPASYSNSLQGSPVAISRYHSAPSALGITSVLQDHTPTDIKEVTHAMTVSPASTLPPSDSKESKSIEPSSTSVCPASSPALLPSLPVKSSGDALASVEKTFKPLASAPPSKCEPNSELAQSVVTKHSENKMDDNGQKSLVMPPPLPPPALPFDAIQSSLSMPTPPTPALSSPSSAMKSSHLSHPPPSPLPETSPSTGKDTFKGPPTPPPPPPPSFSGQNSSLTPPLPPYPTGQTSSSSIPLPPPSPSSTRQTSSSSIPPPPPPAPSSTGKTSSSSIPPPPPPSMSGPPPPPPPPRHSGTTPGSTPTSIVSPPPPPPPPASASQNSLSRNPTNPPPVPPPPAAPANGLSKSGAPPLQLHTGAGNGNVPPIPGPPSGALFGAKGRGLLRPNPKIQTQTKRNNLKPYHWLKLTRAMQGSLWAETQKLDEASRAPEFDMSELETYFAAVAPNSEKGGKSNRRVSGQKADKVQLIELRRAYNCEIMLTKVKIPLPDLMSAVLALDDSILQVDQVENLIKFCPTKEEIEMLKNYKGDTDNLGKCEQFFLELMKVPRVENKLRVFSFKMQFCTQVADLRRDLSIVNSTSEEIRNSVKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRARNNKMTLMHYLCKVLADKLPELLDFPKDLVSLEASTKIQLKYLAEEMTAIDKGLEKVVQELTASENDGPVSDNFCQILKEFLHDAEAEVRCLAQLYANVGRNADALTLYFGEDPARCPFEQVVSTLLNFVRMFVRAHDENFKQIEYEKKKAEKEAAEKEKLKLGSKESEHLIRTPIKSRSIK* 1623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2920 1622 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1275 1600 - -
Lja5g2920 1622 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1201 1599 IPR015425 -
Lja5g2920 1622 Coils Coil 1574 1606 - -
Lja5g2920 1622 Gene3D - 196 341 - -
Lja5g2920 1622 MobiDBLite consensus disorder prediction 493 507 - -
Lja5g2920 1622 Pfam Formin Homology 2 Domain 1204 1573 IPR015425 -
Lja5g2920 1622 MobiDBLite consensus disorder prediction 966 991 - -
Lja5g2920 1622 Pfam C2 domain of PTEN tumour-suppressor protein 200 337 IPR014020 -
Lja5g2920 1622 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Lja5g2920 1622 SMART PTEN_C2_2 197 337 IPR014020 -
Lja5g2920 1622 MobiDBLite consensus disorder prediction 1140 1154 - -
Lja5g2920 1622 MobiDBLite consensus disorder prediction 800 820 - -
Lja5g2920 1622 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Lja5g2920 1622 MobiDBLite consensus disorder prediction 1116 1131 - -
Lja5g2920 1622 Gene3D Formin, FH2 domain 1220 1610 IPR042201 -
Lja5g2920 1622 MobiDBLite consensus disorder prediction 1084 1109 - -
Lja5g2920 1622 PANTHER FORMIN-J 1114 1611 - -
Lja5g2920 1622 PANTHER FORMIN-J 1 698 - -
Lja5g2920 1622 SMART it6_source 947 1619 IPR015425 -
Lja5g2920 1622 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
Lja5g2920 1622 MobiDBLite consensus disorder prediction 1011 1057 - -
Lja5g2920 1622 MobiDBLite consensus disorder prediction 666 774 - -
Lja5g2920 1622 Gene3D Protein tyrosine phosphatase superfamily 12 191 IPR029021 -
Lja5g2920 1622 MobiDBLite consensus disorder prediction 855 1209 - -
Lja5g2920 1622 MobiDBLite consensus disorder prediction 474 511 - -
Lja5g2920 1622 MobiDBLite consensus disorder prediction 649 665 - -
Lja5g2920 1622 MobiDBLite consensus disorder prediction 567 586 - -
Lja5g2920 1622 MobiDBLite consensus disorder prediction 857 888 - -
Lja5g2920 1622 MobiDBLite consensus disorder prediction 474 492 - -
Lja5g2920 1622 MobiDBLite consensus disorder prediction 624 779 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2920 Lja-Chr5 57467964 57481555 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2920 778 845 FH2 protein (formin) Gene Family AT2G25050 48.529 1.05e-10 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2920 - - lja:Lj5g3v0483820.1 1961.81