Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2908 ATGGCATCCAACAAGCAAGATAAGCACTCTCCAATCCGATTCTTTAAGATCATCACCACAAGTAGTATTGAAGGTGGAAATCTTATTCTTCCAAATGGTTTCATGAAGAAATACAGTGGTGGCATGTCAAACCCAGTATTTCTCAAGGCTCCTGATAACACTAGTTGGGAGATACACTGGAGCAAACATGATTCATATTTTTGGTTCCAAAAGGGTTGGAAAGAGTTTGTGAAATACTACTCCCTTGATCATGGGCACTTGGTATTGTTTGAATTCAAGGATGCTTCTCATTTTGGGGTACACATATTTGATAACAGTACCCTTGAAATAGAATATCCTTCAAATGAGAATCAAGGTGAAGAGCACAACCCTGATCAGATTGGTGATGAGATACTGCTGCCCAAGAAGACTAAACCAAAATCACCAATGTCACTTTCTCGACCATGCAAGAAATTGAGAACTGGTAAAAGCAAAGATGTTGGAAAAAGCCCTGAATTGAGAAAGCGTAAGAAAGTCCAAGTTGAAGGTGGGGAGCCAAGTAGCCTGGGCCCACACTTCACTGCACAGGGGGAAGCTCGGAAATACACCCCAAAGAATCCCTCTTTCACTGTCAGTTTAAAGCCGGTCATTAAACTTGCGTACAGACCGCCTGTACCCATTTCCTTCATCAGAGAGTACTTGAATGAGAAGAAGCAAACCATAAAGTTAAAGATTGAAGAAAATTTGTGGCCTGTGGAGTTTATATATTATCCGGAACATGGTTCAGGCAAGTTGTCTAAAGGTTGGATACAATTTGCAAAGGAAAGTAAACTTGTAGGTGGAGATTTGTTGTTATTTCTCCCTAGTATGGATATTCAGTTCAAATATTCGGTTATTTTAGGGAGAGAGAGCTTTTCTATAGTTCCAGCATCCATGACTCGAAACATGCCAAATAATCACTCTCCAATCCTTTTCTTTAAGATCATCACAACGACAAGTATTGAAACTGGAGAGCTTAGGATTCCAAACAATTTCACTAAGAGATATGGTGGTGATATGGCAAACCCAACGTTTCTCAAGCCTCCAGATGGAACTGATTGGAAAATATATCATAGTAAAACTGATGGGGATGTTTGGTTTCAAAATGGTTGGAAAGATTTTGCGAAATATTACTCCCTTGATCACGGACACATGGTGTTGTTTGAATACAAGGATACTTCTCATTTTGGGGTACATATATTTGATAAGAGCACCCTTGAAATAAGATATCCTTCACATGAGAATCAAGATGAAGAGCACAACCCTGATCAGATTGATGATGACTCAGTTGAGATATTGGATAAGATACCTCCTTGCAAGAAGACTAAACTGAAATCACCAATGTCGTGTCCTAAACCACGCAAGAAATTGAGAACCAGTACAAGTGAAGATGTTGGAGAAAGCCCTGAATTGCACAACTTACCTAAACAAGTCAAAATTGAAGATGATGCCGGTAGAACCACTGAATGCCTTGAAGGGGAGGACCTAACTTCCAAAATCACTGAAGCTTTGAACAGAGCCAGAACCTTCCAATCTAAATTTCCCTCCTTCATGACTGTCATGAAACCTGCCTATGTTAATGGATATTCCTTGCATATACCATCATTCTTTGCAAAAAAATATTTGAAGAATGAAACGGATGTCCTCCTGCAAGTCTTGGATGGAAGAACTTGGTCTGTTAGTTTTAACCTCGGCAAATTCAATGCTGGGTGGAAGAAATTCACATCAGTTAATAATTTGAAGGTGGGAGATGTATGTCTTTTTGAGCTAAACAAGAGTGTACCCCTTTCATTGAAAGTATTGATCTTTCCACTTGCAGAAGAACCGCATTCGCTGCCTCGATCACTAGGTGCGGAGACAATTAAAAGAACTTCAAAGCTAATTAGCCCCTGCCCCTTGAAAAATGCTGCTCTGGAAGAAGCTAACAAATTCAACTCAAACAATCCCTTTTTCATAGTCAATATAGCGCCAGATAAGAACCGAGATTACAGACCGCGCGTACCAAAGCTCTTCATCAGGAAGCACTTCAATGACATCCAGCAGAGTGAGCAGACAGTAATATTACAGTGCGAAAAGAAATTGTGTCCTGTGAAGTTGACCTGTTATCCAAAAAAAGGTCCAAGCAGGTTGTCCAAAGGTTGGGTCGAATTTGCTAAAAAAAGTAAATTGGAAGTTGGAGATGCTTGTGTCTTTGAGCTCATCAATAAGGAAGATCCGGTGCTTGATGTTCACATTTACAGAGGTCACTGA 2268 0.4004 MASNKQDKHSPIRFFKIITTSSIEGGNLILPNGFMKKYSGGMSNPVFLKAPDNTSWEIHWSKHDSYFWFQKGWKEFVKYYSLDHGHLVLFEFKDASHFGVHIFDNSTLEIEYPSNENQGEEHNPDQIGDEILLPKKTKPKSPMSLSRPCKKLRTGKSKDVGKSPELRKRKKVQVEGGEPSSLGPHFTAQGEARKYTPKNPSFTVSLKPVIKLAYRPPVPISFIREYLNEKKQTIKLKIEENLWPVEFIYYPEHGSGKLSKGWIQFAKESKLVGGDLLLFLPSMDIQFKYSVILGRESFSIVPASMTRNMPNNHSPILFFKIITTTSIETGELRIPNNFTKRYGGDMANPTFLKPPDGTDWKIYHSKTDGDVWFQNGWKDFAKYYSLDHGHMVLFEYKDTSHFGVHIFDKSTLEIRYPSHENQDEEHNPDQIDDDSVEILDKIPPCKKTKLKSPMSCPKPRKKLRTSTSEDVGESPELHNLPKQVKIEDDAGRTTECLEGEDLTSKITEALNRARTFQSKFPSFMTVMKPAYVNGYSLHIPSFFAKKYLKNETDVLLQVLDGRTWSVSFNLGKFNAGWKKFTSVNNLKVGDVCLFELNKSVPLSLKVLIFPLAEEPHSLPRSLGAETIKRTSKLISPCPLKNAALEEANKFNSNNPFFIVNIAPDKNRDYRPRVPKLFIRKHFNDIQQSEQTVILQCEKKLCPVKLTCYPKKGPSRLSKGWVEFAKKSKLEVGDACVFELINKEDPVLDVHIYRGH* 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2908 755 SUPERFAMILY DNA-binding pseudobarrel domain 516 609 IPR015300 -
Lja5g2908 755 ProSiteProfiles B3 DNA-binding domain profile. 317 410 IPR003340 GO:0003677
Lja5g2908 755 MobiDBLite consensus disorder prediction 448 475 - -
Lja5g2908 755 CDD B3_DNA 13 104 IPR003340 GO:0003677
Lja5g2908 755 ProSiteProfiles B3 DNA-binding domain profile. 201 295 IPR003340 GO:0003677
Lja5g2908 755 SUPERFAMILY DNA-binding pseudobarrel domain 313 410 IPR015300 -
Lja5g2908 755 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 313 609 - -
Lja5g2908 755 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 628 753 - -
Lja5g2908 755 Pfam B3 DNA binding domain 523 609 IPR003340 GO:0003677
Lja5g2908 755 Pfam B3 DNA binding domain 656 753 IPR003340 GO:0003677
Lja5g2908 755 Pfam B3 DNA binding domain 14 105 IPR003340 GO:0003677
Lja5g2908 755 Pfam B3 DNA binding domain 318 409 IPR003340 GO:0003677
Lja5g2908 755 PANTHER B3 DOMAIN-CONTAINING 5 292 - -
Lja5g2908 755 SUPERFAMILY DNA-binding pseudobarrel domain 195 281 IPR015300 -
Lja5g2908 755 CDD B3_DNA 656 753 IPR003340 GO:0003677
Lja5g2908 755 SUPERFAMILY DNA-binding pseudobarrel domain 650 753 IPR015300 -
Lja5g2908 755 MobiDBLite consensus disorder prediction 114 187 - -
Lja5g2908 755 CDD B3_DNA 521 610 IPR003340 GO:0003677
Lja5g2908 755 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
Lja5g2908 755 MobiDBLite consensus disorder prediction 152 175 - -
Lja5g2908 755 CDD B3_DNA 317 408 IPR003340 GO:0003677
Lja5g2908 755 Gene3D - 639 754 IPR015300 -
Lja5g2908 755 Gene3D - 503 613 IPR015300 -
Lja5g2908 755 Gene3D - 186 296 IPR015300 -
Lja5g2908 755 CDD B3_DNA 200 279 IPR003340 GO:0003677
Lja5g2908 755 MobiDBLite consensus disorder prediction 115 136 - -
Lja5g2908 755 SUPERFAMILY DNA-binding pseudobarrel domain 9 106 IPR015300 -
Lja5g2908 755 Gene3D - 5 107 IPR015300 -
Lja5g2908 755 Gene3D - 311 411 IPR015300 -
Lja5g2908 755 ProSiteProfiles B3 DNA-binding domain profile. 656 755 IPR003340 GO:0003677
Lja5g2908 755 PANTHER B3 DOMAIN-CONTAINING 313 609 - -
Lja5g2908 755 PANTHER B3 DOMAIN-CONTAINING 628 753 - -
Lja5g2908 755 ProSiteProfiles B3 DNA-binding domain profile. 522 610 IPR003340 GO:0003677
Lja5g2908 755 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 5 292 - -
Lja5g2908 755 SMART B3_2 202 297 IPR003340 GO:0003677
Lja5g2908 755 SMART B3_2 523 612 IPR003340 GO:0003677
Lja5g2908 755 SMART B3_2 318 410 IPR003340 GO:0003677
Lja5g2908 755 SMART B3_2 656 755 IPR003340 GO:0003677
Lja5g2908 755 SMART B3_2 14 106 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2908 Lja-Chr5 57327272 57336478 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2908 640 753 B3 DNA Binding Superfamily AT3G18990 33.913 7.33e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja5g2908 B3 9.3e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2908 - - lja:Lj5g3v0508090.1 919.842